RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA857143" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 4 ✖

bioproject 1

  • PRJNA857143 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12322708 12322708 PRJNA857143_S_NODE_16990_length_561_cov_37.471311_g15924_i0 PRJNA857143 16990 561 37.471311 210.21405471 Podomonas magna 2925398 Root_unresolved Root_unresolved 207 1.11e-48   NTclustered gi|2206682163|gb|OM966636.1| 2925398 g15924 i0 87.363 37.7344028520499 182 21 32 2 1 182 5809 5988 Podomonas magna strain CCAP19014 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 21169 207 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Podomonas Podomonas magna
14872582 14872582 PRJNA857143_S_NODE_96152_length_317_cov_3.450820_g95059_i0 PRJNA857143 96152 317 3.45082 10.9390994 Thecamonas trahens 529818 Root_unresolved Root_unresolved 69.4 2.95e-7   NTclustered gi|923135822|ref|XM_013905923.1| 461836 g95059 i0 97.5 0.236593059936909 40 1 13 0 226 265 1513 1474 Thecamonas trahens ATCC 50062 phosphatidylinositol 3-and 4-kinase (AMSG_01873), partial mRNA blastn 75 69.4 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
19970166 19970166 PRJNA857143_S_NODE_175996_length_250_cov_1.056497_g174903_i0 PRJNA857143 175996 250 1.056497 2.6412425 Thecamonas trahens 529818 Root_unresolved Root_unresolved 207 4.57e-49   NTclustered gi|761380055|ref|NC_026452.1| 529818 g174903 i0 82.041 87.672 245 42 97 2 1 243 786 542 Thecamonas trahens strain ATCC 50062 mitochondrion, complete genome blastn 21918 207 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
22520145 22520145 PRJNA857143_S_NODE_161558_length_258_cov_1.264865_g160465_i0 PRJNA857143 161558 258 1.264865 3.2633517 Thecamonas trahens 529818 Root_unresolved Root_unresolved 60.2 1.4e-4   NTclustered gi|923133852|ref|XM_013904938.1| 461836 g160465 i0 100 3.41472868217054 32 0 12 0 49 80 263 232 Thecamonas trahens ATCC 50062 uncharacterized protein (AMSG_03055), partial mRNA blastn 881 60.2 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;