RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA855894" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA855894 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5945402 5945402 PRJNA855894_P_NODE_27485_length_267_cov_2.082474_g27363_i0 PRJNA855894 27485 267 2.082474 5.56020558 Deinococcus taeanensis 2737050 Bacteria Bacteria 403 5.8499999999999995e-108   NTclustered gi|2105694697|gb|CP083456.1| 2737050 g27363 i0 94.03 252.161048689139 268 13 100 3 1 267 1550 1285 Deinococcus taeanensis strain TS293 plasmid p_TS293_2, complete sequence blastn 67327 403 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus taeanensis
11438677 11438677 PRJNA855894_P_NODE_19229_length_344_cov_0.837638_g19107_i0 PRJNA855894 19229 344 0.837638 2.88147472 Deinococcus 1298 Bacteria Bacteria 544 4.4e-150   NTclustered gi|470483488|ref|NR_076595.1| 310783 g19107 i0 95.101 239.741279069767 347 14 100 3 1 344 1499 1845 Deinococcus deserti strain VCD115 23S ribosomal RNA gene, complete sequence blastn 82471 544 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus deserti
17812469 17812469 PRJNA855894_P_NODE_25614_length_284_cov_0.938389_g25492_i0 PRJNA855894 25614 284 0.938389 2.66502476 Deinococcus 1298 Bacteria Bacteria 398 2.9199999999999993e-106   NTclustered gi|1435316362|gb|CP031158.1| 980427 g25492 i0 92.254 207.12676056338 284 17 100 4 1 284 1793355 1793633 Deinococcus wulumuqiensis strain NEB 479 chromosome, complete genome blastn 58824 398 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus wulumuqiensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;