RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA854078" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA854078 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14869670 14869670 PRJNA854078_P_NODE_3012_length_547_cov_2.487342_g2800_i0 PRJNA854078 3012 547 2.487342 13.60576074 Lytechinus variegatus 7654 Echinodermata other_Eukaryota 291 1.05e-73   NTclustered gi|2037937404|ref|XM_041617748.1| 7654 g2800 i0 80.789 54.0566727605119 380 65 69 7 93 467 158 534 PREDICTED: Lytechinus variegatus ras-related protein Rac1 (LOC121422598), mRNA blastn 29569 291 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus
22518457 22518457 PRJNA854078_P_NODE_3938_length_479_cov_5.763547_g3726_i0 PRJNA854078 3938 479 5.763547 27.60739013 Paracentrotus lividus 7656 Echinodermata other_Eukaryota 272 3.2899999999999993e-68   NTclustered gi|557665|emb|X76081.1| 7656 g3726 i0 79.839 74.7912317327766 372 75 78 0 1 372 104 475 P.lividus H3.3 Histone mRNA blastn 35825 272 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Echinidae Paracentrotus Paracentrotus lividus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;