RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA854078" and tax_phylum = "Cnidaria"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Cnidaria · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA854078 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7219887 7219887 PRJNA854078_P_NODE_4526_length_446_cov_27.225201_g4314_i0 PRJNA854078 4526 446 27.225201 121.42439646 Hydractinia symbiolongicarpus 13093 Cnidaria other_Eukaryota 56.5 0.003   NTclustered gi|2519010430|ref|XM_057456658.1| 13093 g4314 i0 96.97 0.147982062780269 33 1 7 0 288 320 861 829 PREDICTED: Hydractinia symbiolongicarpus uncharacterized LOC130654126 (LOC130654126), mRNA blastn 66 56.5 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Anthoathecata Hydractiniidae Hydractinia Hydractinia symbiolongicarpus
11045301 11045301 PRJNA854078_P_NODE_11109_length_283_cov_0.842857_g10897_i0 PRJNA854078 11109 283 0.842857 2.38528531 Dendronephthya gigantea 151771 Cnidaria other_Eukaryota 202 2.4499999999999998e-47   NTclustered gi|1603798048|ref|XM_028547034.1| 151771 g10897 i0 79.577 33.8339222614841 284 56 100 2 1 283 701 983 PREDICTED: Dendronephthya gigantea signal recognition particle 54 kDa protein (LOC114525635), mRNA blastn 9575 202 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Malacalcyonacea Nephtheidae Dendronephthya Dendronephthya gigantea
16144467 16144467 PRJNA854078_P_NODE_3553_length_505_cov_1.425926_g3341_i0 PRJNA854078 3553 505 1.425926 7.2009263 Hydractinia symbiolongicarpus 13093 Cnidaria other_Eukaryota 357 9.34e-94   NTclustered gi|2518964637|ref|XM_057436205.1| 13093 g3341 i0 79.637 65.5326732673267 496 101 98 0 1 496 111 606 PREDICTED: Hydractinia symbiolongicarpus tubulin beta-4B chain (LOC130614756), mRNA blastn 33094 357 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Anthoathecata Hydractiniidae Hydractinia Hydractinia symbiolongicarpus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;