RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA854078" and tax_phylum = "Actinomycetota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA854078 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2510325 2510325 PRJNA854078_P_NODE_16802_length_238_cov_2.836364_g16590_i0 PRJNA854078 16802 238 2.836364 6.75054632 Corynebacterium 1716 Bacteria Bacteria 440 3.899999999999999e-119   NTclustered gi|1540233514|emb|LR134504.1| 43768 g16590 i0 100 103 238 0 100 0 1 238 522341 522104 Corynebacterium matruchotii strain NCTC10206 genome assembly, chromosome: 1 blastn 24514 440 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium matruchotii
3392376 3392376 PRJNA854078_P_NODE_16683_length_241_cov_0.916667_g16471_i0 PRJNA854078 16683 241 0.916667 2.20916747 Corynebacterium marquesiae 2913503 Bacteria Bacteria 412 8.64e-111   NTclustered gi|2869847307|gb|CP175787.1| 2913503 g16471 i0 97.51 13.0580912863071 241 6 100 0 1 241 372995 372755 Corynebacterium marquesiae strain YSMAA1_1_H4 chromosome, complete genome blastn 3147 412 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium marquesiae
5944962 5944962 PRJNA854078_P_NODE_9885_length_299_cov_1.831858_g9673_i0 PRJNA854078 9885 299 1.831858 5.47725542 Corynebacterium matruchotii 43768 Bacteria Bacteria 553 6.25e-153   NTclustered gi|1540233514|emb|LR134504.1| 43768 g9673 i0 100 389.501672240803 299 0 100 0 1 299 519491 519193 Corynebacterium matruchotii strain NCTC10206 genome assembly, chromosome: 1 blastn 116461 553 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium matruchotii
7612778 7612778 PRJNA854078_P_NODE_10226_length_294_cov_1.393665_g10014_i0 PRJNA854078 10226 294 1.393665 4.0973751 Actinomyces 1654 Bacteria Bacteria 481 2.94e-131   NTclustered gi|2219514734|dbj|AP025697.1| 1655 g10014 i0 96.271 249.119047619048 295 8 100 3 1 294 486949 486657 Actinomyces naeslundii ATCC 27039 DNA, complete genome blastn 73241 481 1 Bacteria   Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces naeslundii
12714349 12714349 PRJNA854078_P_NODE_16390_length_242_cov_0.911243_g16178_i0 PRJNA854078 16390 242 0.911243 2.20520806 Cutibacterium 1912216 Bacteria Bacteria 436 5.1499999999999985e-118   NTclustered gi|1446500593|gb|CP031442.1| 1747 g16178 i0 99.174 51 242 2 100 0 1 242 617633 617392 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 12342 436 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
19086305 19086305 PRJNA854078_P_NODE_15815_length_244_cov_0.900585_g15603_i0 PRJNA854078 15815 244 0.900585 2.1974274 Cutibacterium 1912216 Bacteria Bacteria 451 1.86e-122   NTclustered gi|1446500593|gb|CP031442.1| 1747 g15603 i0 100 53.9631147540984 244 0 100 0 1 244 1634685 1634928 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 13167 451 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
19086306 19086306 PRJNA854078_P_NODE_16595_length_241_cov_0.916667_g16383_i0 PRJNA854078 16595 241 0.916667 2.20916747 Rothia 32207 Bacteria Bacteria 313 9.01e-81   NTclustered gi|1247210625|gb|CP023510.1| 43675 g16383 i0 90.083 5.79668049792531 242 22 100 2 1 241 1722642 1722882 Rothia mucilaginosa strain FDAARGOS_369 chromosome, complete genome blastn 1397 313 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia Rothia mucilaginosa
20361111 20361111 PRJNA854078_P_NODE_4396_length_453_cov_1.784211_g4184_i0 PRJNA854078 4396 453 1.784211 8.08247583 Pseudarthrobacter 1742993 Bacteria Bacteria 54.7 0.012   NTclustered gi|1695528078|gb|CP041187.1| 2590774 g4184 i0 100 0.1280353200883 29 0 6 0 381 409 1838926 1838954 Pseudarthrobacter sp. NIBRBAC000502771 chromosome, complete genome blastn 58 54.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Pseudarthrobacter Pseudarthrobacter sp. NIBRBAC000502771

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;