RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA854078" and tax_clade = "Sar"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA854078 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14869647 14869647 PRJNA854078_P_NODE_16232_length_242_cov_1.449704_g16020_i0 PRJNA854078 16232 242 1.449704 3.50828368 Vorticella sp. 4 JG-2011 1295638 SAR_Eukaryotes SAR_Eukaryotes 425 1.11e-114   NTclustered gi|512134943|gb|JX178902.1| 1295638 g16020 i0 98.347 100.252066115702 242 4 100 0 1 242 1042 1283 Vorticella sp. 4 JG-2011 clone 2 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 24261 425 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Vorticella Vorticella sp. 4 JG-2011
16537412 16537412 PRJNA854078_P_NODE_6233_length_378_cov_1.009836_g6021_i0 PRJNA854078 6233 378 1.009836 3.81718008 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 60.2 2.15e-4   NTclustered gi|915143536|ref|XM_013482534.1| 5804 g6021 i0 100 0.973544973544973 32 0 8 0 347 378 2461 2430 Eimeria maxima ATP-dependent RNA helicase, putative partial mRNA blastn 368 60.2 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria maxima
25067746 25067746 PRJNA854078_P_NODE_11640_length_276_cov_1.517241_g11428_i0 PRJNA854078 11640 276 1.517241 4.18758516 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 100 8.94e-17   NTclustered gi|673049800|ref|XM_008880639.1| 157072 g11428 i0 82.203 16.1775362318841 118 19 42 2 1 117 1064 1180 Aphanomyces invadans actin mRNA blastn 4465 100 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;