contig_metadata
11 rows where analysis = "blastn", bioproject = "PRJNA853203" and tax_phylum = "Thermodesulfobacteriota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3392016 | 3392016 | PRJNA853203_P_NODE_14263_length_279_cov_1.174757_g14114_i0 | PRJNA853203 | 14263 | 279 | 1.174757 | 3.27757203 | Smithellaceae bacterium | 2964540 | Bacteria | Bacteria | 52.8 | 0.026 | NTclustered | gi|2626216295|emb|OY821638.1| | 2964540 | g14114 | i0 | 100 | 0.100358422939068 | 28 | 0 | 10 | 0 | 165 | 192 | 1245808 | 1245781 | MAG: Smithellaceae bacterium isolate 7d888188-1d27-4603-a379-950c855845c6 genome assembly, chromosome: 1 | blastn | 28 | 52.8 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Syntrophia | Syntrophales | Smithellaceae | Smithellaceae bacterium | |||
| 3392275 | 3392275 | PRJNA853203_P_NODE_8083_length_296_cov_1.372197_g7934_i0 | PRJNA853203 | 8083 | 296 | 1.3721969999999999 | 4.06170312 | Desulfomicrobium baculatum | 899 | Bacteria | Bacteria | 62.1 | 4.57e-5 | NTclustered | gi|256576994|gb|CP001629.1| | 525897 | g7934 | i0 | 92.857 | 0.141891891891892 | 42 | 3 | 14 | 0 | 14 | 55 | 2783390 | 2783431 | Desulfomicrobium baculatum DSM 4028, complete genome | blastn | 42 | 62.1 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfovibrionia | Desulfovibrionales | Desulfomicrobiaceae | Desulfomicrobium | Desulfomicrobium baculatum | ||
| 4670035 | 4670035 | PRJNA853203_P_NODE_48884_length_236_cov_2.582822_g48735_i0 | PRJNA853203 | 48884 | 236 | 2.582822 | 6.09545992 | Oceanidesulfovibrio marinus | 370038 | Bacteria | Bacteria | 176 | 1.1999999999999999e-39 | NTclustered | gi|1841667704|gb|CP039543.1| | 370038 | g48735 | i0 | 84.971 | 6.78389830508475 | 173 | 26 | 73 | 0 | 46 | 218 | 1915962 | 1915790 | Oceanidesulfovibrio marinus strain CS1 chromosome, complete genome | blastn | 1601 | 176 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfovibrionia | Desulfovibrionales | Desulfovibrionaceae | Oceanidesulfovibrio | Oceanidesulfovibrio marinus | ||
| 9769660 | 9769660 | PRJNA853203_P_NODE_9548_length_290_cov_1.437788_g9399_i0 | PRJNA853203 | 9548 | 290 | 1.437788 | 4.1695852 | Desulfovibrio aminophilus | 81425 | Bacteria | Bacteria | 246 | 1.1499999999999999e-60 | NTclustered | gi|2908463109|gb|CP168306.1| | 81425 | g9399 | i0 | 85.654 | 2.13793103448276 | 237 | 30 | 81 | 3 | 2 | 236 | 1364698 | 1364932 | MAG: Desulfovibrio aminophilus isolate Co chromosome, complete genome | blastn | 620 | 246 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfovibrionia | Desulfovibrionales | Desulfovibrionaceae | Desulfovibrio | Desulfovibrio aminophilus | ||
| 12320722 | 12320722 | PRJNA853203_P_NODE_37910_length_247_cov_0.896552_g37761_i0 | PRJNA853203 | 37910 | 247 | 0.896552 | 2.21448344 | Desulfobacterales bacterium | 2044940 | Bacteria | Bacteria | 113 | 1.01e-20 | NTclustered | gi|2108019731|gb|CP070768.1| | 2044940 | g37761 | i0 | 87.755 | 2.17004048582996 | 98 | 10 | 40 | 1 | 67 | 164 | 974187 | 974092 | MAG: Desulfobacterales bacterium isolate bin239 chromosome | blastn | 536 | 113 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfobacteria | Desulfobacterales | Desulfobacterales bacterium | ||||
| 16144163 | 16144163 | PRJNA853203_P_NODE_25413_length_255_cov_1.417582_g25264_i0 | PRJNA853203 | 25413 | 255 | 1.417582 | 3.6148341 | Desulfovibrio aminophilus | 81425 | Bacteria | Bacteria | 111 | 3.77e-20 | NTclustered | gi|2908463109|gb|CP168306.1| | 81425 | g25264 | i0 | 81.955 | 3.83529411764706 | 133 | 22 | 52 | 2 | 111 | 242 | 2576509 | 2576378 | MAG: Desulfovibrio aminophilus isolate Co chromosome, complete genome | blastn | 978 | 111 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfovibrionia | Desulfovibrionales | Desulfovibrionaceae | Desulfovibrio | Desulfovibrio aminophilus | ||
| 17419512 | 17419512 | PRJNA853203_P_NODE_10094_length_289_cov_1.143519_g9945_i0 | PRJNA853203 | 10094 | 289 | 1.143519 | 3.30476991 | Desulfatibacillum aliphaticivorans | 218208 | Bacteria | Bacteria | 228 | 4.139999999999999e-55 | NTclustered | gi|218759244|gb|CP001322.1| | 218208 | g9945 | i0 | 81.655 | 2.75432525951557 | 278 | 47 | 96 | 4 | 4 | 279 | 4795990 | 4796265 | Desulfatibacillum aliphaticivorans strain AK-01, complete genome | blastn | 796 | 228 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfobacteria | Desulfobacterales | Desulfatibacillaceae | Desulfatibacillum | Desulfatibacillum aliphaticivorans | ||
| 17812221 | 17812221 | PRJNA853203_P_NODE_5714_length_323_cov_1.916000_g5565_i0 | PRJNA853203 | 5714 | 323 | 1.916 | 6.18868 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 475 | 1.52e-129 | NTclustered | gi|2893358420|emb|OZ220712.1| | 2202153 | g5565 | i0 | 93.189 | 145.532507739938 | 323 | 22 | 100 | 0 | 1 | 323 | 1710708 | 1711030 | MAG: Thermodesulfobacteriota bacterium isolate 564989d4-0a31-48dd-8468-51938819ad86 genome assembly, chromosome: 1 | blastn | 47007 | 475 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Thermodesulfobacteriota bacterium | ||||||
| 22518061 | 22518061 | PRJNA853203_P_NODE_1558_length_486_cov_4.719128_g1411_i0 | PRJNA853203 | 1558 | 486 | 4.719128 | 22.93496208 | Thermodesulfobacteriota bacterium | 2202153 | Bacteria | Bacteria | 243 | 2.62e-59 | NTclustered | gi|2556892445|gb|CP129479.1| | 2202153 | g1411 | i0 | 76.342 | 83.2222222222222 | 503 | 89 | 99 | 21 | 4 | 486 | 887043 | 886551 | MAG: Thermodesulfobacteriota bacterium isolate cMAG.17 chromosome, complete genome | blastn | 40446 | 243 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Thermodesulfobacteriota bacterium | ||||||
| 22912272 | 22912272 | PRJNA853203_P_NODE_17458_length_271_cov_2.888889_g17309_i0 | PRJNA853203 | 17458 | 271 | 2.888889 | 7.82888919 | Desulfosudis | 2904716 | Bacteria | Bacteria | 206 | 1.7999999999999998e-48 | NTclustered | gi|158508843|gb|CP000859.1| | 96561 | g17309 | i0 | 80.952 | 122.538745387454 | 273 | 41 | 99 | 11 | 1 | 268 | 683135 | 683401 | Desulfococcus oleovorans Hxd3, complete genome | blastn | 33208 | 206 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfobacteria | Desulfobacterales | Desulfosudaceae | Desulfosudis | Desulfosudis oleivorans | ||
| 23793682 | 23793682 | PRJNA853203_P_NODE_33819_length_249_cov_0.886364_g33670_i0 | PRJNA853203 | 33819 | 249 | 0.886364 | 2.20704636 | Desulfobulbus oligotrophicus | 1909699 | Bacteria | Bacteria | 102 | 2.21e-17 | NTclustered | gi|1951276582|gb|CP054140.1| | 1909699 | g33670 | i0 | 74.797 | 1.96385542168675 | 246 | 52 | 97 | 10 | 7 | 248 | 162574 | 162813 | Desulfobulbus oligotrophicus strain Prop6 chromosome, complete genome | blastn | 489 | 102 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfobulbia | Desulfobulbales | Desulfobulbaceae | Desulfobulbus | Desulfobulbus oligotrophicus |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;