RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA853203" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA853203 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8494260 8494260 PRJNA853203_P_NODE_187_length_1533_cov_6.112329_g122_i0 PRJNA853203 187 1533 6.112329 93.70200357 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 331 1.81e-85   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g122 i0 88.686 17.0026092628832 274 27 32 4 419 689 3195 2923 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 26065 331 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
19968148 19968148 PRJNA853203_P_NODE_576_length_887_cov_5.417690_g449_i0 PRJNA853203 576 887 5.41769 48.0549103 Parafumarolamoeba stagnalis 2872509 Heterolobosea other_Eukaryota 1349 0   NTclustered gi|2086087549|gb|MZ919148.1| 2872509 g449 i0 94.369 32.3472378804961 888 34 99 14 1 882 1197 320 Parafumarolamoeba stagnalis small subunit ribosomal RNA gene, partial sequence blastn 28692 1349 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Parafumarolamoeba Parafumarolamoeba stagnalis
22912311 22912311 PRJNA853203_P_NODE_26938_length_253_cov_0.866667_g26789_i0 PRJNA853203 26938 253 0.866667 2.19266751 Allovahlkampfia 1217108 Heterolobosea other_Eukaryota 468 1.92e-127   NTclustered gi|399764158|gb|JQ271669.1| 1217110 g26789 i0 100 30.0355731225296 253 0 100 0 1 253 373 121 Allovahlkampfia sp. PKD 2011a strain PS1073J 18S ribosomal RNA gene, partial sequence blastn 7599 468 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. PKD 2011a

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;