RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA853203" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA853203 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2116873 2116873 PRJNA853203_P_NODE_39462_length_246_cov_0.901734_g39313_i0 PRJNA853203 39462 246 0.901734 2.21826564 uncultured Armatimonadetes bacterium 157466 Bacteria Bacteria 281 2.6000000000000007e-71   NTclustered gi|2874254000|emb|OY970325.1| 157466 g39313 i0 88.017 132.154471544715 242 23 97 6 3 241 1305011 1305249 MAG: uncultured Armatimonadetes bacterium isolate MFD05942.bin.1.84 genome assembly, chromosome: 1 blastn 32510 281 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium
17419788 17419788 PRJNA853203_P_NODE_49574_length_230_cov_2.592357_g49425_i0 PRJNA853203 49574 230 2.592357 5.9624211 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 220 5.32e-53   NTclustered gi|2076449834|gb|CP075365.1| 2682144 g49425 i0 84.615 3.53913043478261 221 34 96 0 1 221 2261274 2261054 MAG: Fimbriimonadaceae bacterium isolate ACE_ARM2 chromosome blastn 814 220 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;