RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA853203" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA853203 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12320836 12320836 PRJNA853203_P_NODE_9330_length_291_cov_1.041284_g9181_i0 PRJNA853203 9330 291 1.041284 3.03013644 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 2056494 Bacteria Bacteria 187 7.0799999999999984e-43   NTclustered gi|1340357306|gb|CP025011.1| 2056494 g9181 i0 79.323 0.914089347079038 266 55 91 0 18 283 811222 810957 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 chromosome, complete genome blastn 266 187 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20
13595348 13595348 PRJNA853203_P_NODE_6031_length_319_cov_1.544715_g5882_i0 PRJNA853203 6031 319 1.544715 4.92764085 Patescibacteria group bacterium 2052139 Bacteria Bacteria 97.1 1.36e-15   NTclustered gi|2314735175|dbj|AP024680.1| 2052139 g5882 i0 75.439 7.33542319749216 228 41 69 12 5 225 13795 13576 MAG: Patescibacteria group bacterium KatS3mg088 DNA, complete genome blastn 2340 97.1 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
22518355 22518355 PRJNA853203_P_NODE_9158_length_291_cov_1.399083_g9009_i0 PRJNA853203 9158 291 1.399083 4.07133153 Candidatus Nomurabacteria bacterium 2052152 Bacteria Bacteria 171 7.13e-38   NTclustered gi|2258875662|gb|CP060232.1| 2052152 g9009 i0 84.409 14.8453608247423 186 16 62 10 48 226 592462 592283 MAG: Candidatus Nomurabacteria bacterium isolate HK-STAS-PATE-40 chromosome, complete genome blastn 4320 171 1 Bacteria Bacteria candidate phyla   Candidatus Nomuraibacteriota         Candidatus Nomurabacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;