RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA853203" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA853203 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3392108 3392108 PRJNA853203_P_NODE_2923_length_386_cov_0.980831_g2776_i0 PRJNA853203 2923 386 0.980831 3.78600766 Vannella simplex 197532 Discosea other_Eukaryota 702 0   NTclustered gi|284192609|gb|GQ265407.1| 197532 g2776 i0 99.482 99.3341968911917 386 2 100 0 1 386 318 703 Vannella simplex strain L4A Cl 4/1/2 clone A147.4 18S ribosomal RNA gene, partial sequence blastn 38343 702 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella simplex
9769634 9769634 PRJNA853203_P_NODE_5248_length_331_cov_0.941860_g5099_i0 PRJNA853203 5248 331 0.94186 3.1175566 Protostelium mycophagum 472931 Evosea other_Eukaryota 538 1.9599999999999998e-148   NTclustered gi|262262899|gb|FJ766442.1| 472931 g5099 i0 96.073 54.1570996978852 331 12 100 1 1 331 62 391 Protostelium mycophagum strain TB-A2-1 small subunit ribosomal RNA gene, partial sequence blastn 17926 538 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae Protostelium Protostelium mycophagum
12320824 12320824 PRJNA853203_P_NODE_6810_length_310_cov_1.135021_g6661_i0 PRJNA853203 6810 310 1.135021 3.5185651 Amoebozoa sp. 1892891 Root_unresolved Root_unresolved 172 2.13e-38   NTclustered gi|2651357789|gb|PP174304.1| 1892891 g6661 i0 86.538 5.09354838709677 156 21 50 0 155 310 2944 2789 Amoebozoa sp. isolate 114_WLI small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 1579 172 1 Eukaryota Amoebozoa             Amoebozoa sp.
19967969 19967969 PRJNA853203_P_NODE_2556_length_402_cov_1.735562_g2409_i0 PRJNA853203 2556 402 1.735562 6.97695924 Grellamoeba robusta 690712 Evosea other_Eukaryota 737 0   NTclustered gi|268549249|gb|GQ438741.1| 690712 g2409 i0 99.751 37.4577114427861 402 1 100 0 1 402 49 450 Amoebozoa sp. 4168 clone 122 small subunit ribosomal RNA gene, partial sequence blastn 15058 737 1 Eukaryota Amoebozoa   Evosea Variosea Fractovitellida Soliformoviidae Grellamoeba Grellamoeba robusta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;