RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA853194" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA853194 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13594631 13594631 PRJNA853194_S_NODE_67831_length_267_cov_0.953608_g66740_i0 PRJNA853194 67831 267 0.953608 2.54613336 uncultured Desulfobacter sp. 240139 Bacteria Bacteria 52.8 0.024   NTclustered gi|2621785424|emb|OY781882.1| 240139 g66740 i0 100 0.104868913857678 28 0 10 0 143 170 121299 121326 MAG: uncultured Desulfobacter sp. isolate d1cfb46f-64c6-49bd-9162-13cddd374643 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Desulfobacter uncultured Desulfobacter sp.
13988419 13988419 PRJNA853194_S_NODE_86491_length_236_cov_2.042945_g85400_i0 PRJNA853194 86491 236 2.042945 4.8213502 Lawsonia 41707 Bacteria Bacteria 52.8 0.021   NTclustered gi|2318587541|gb|CP107054.1| 29546 g85400 i0 96.875 0.406779661016949 32 0 14 1 152 183 491326 491356 Lawsonia intracellularis strain PPE-GX01-2022 chromosome, complete genome blastn 96 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Lawsonia Lawsonia intracellularis
16143496 16143496 PRJNA853194_S_NODE_57893_length_287_cov_2.140187_g56802_i0 PRJNA853194 57893 287 2.140187 6.14233669 uncultured Desulforhopalus sp. 218291 Bacteria Bacteria 52.8 0.027   NTclustered gi|2621785518|emb|OY781976.1| 218291 g56802 i0 100 0.0975609756097561 28 0 10 0 53 80 5633023 5633050 MAG: uncultured Desulforhopalus sp. isolate bb11d97f-aff7-40c5-8ccb-5babbf234ee9 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfocapsaceae Desulforhopalus uncultured Desulforhopalus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;