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contig_metadata

21 rows where analysis = "blastn", bioproject = "PRJNA853194" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 21 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA853194 · 21 ✖

analysis 1

  • blastn · 21 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
839943 839943 PRJNA853194_S_NODE_21781_length_433_cov_1.386111_g20690_i0 PRJNA853194 21781 433 1.386111 6.00186063 Strongyloides papillosus 174720 Nematoda Nematoda 54.7 0.012   NTclustered gi|690018546|emb|LM525784.1| 174720 g20690 i0 96.875 0.0739030023094688 32 1 7 0 74 105 7910 7879 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000170 blastn 32 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
2115995 2115995 PRJNA853194_S_NODE_52402_length_301_cov_1.083333_g51311_i0 PRJNA853194 52402 301 1.083333 3.26083233 Strongyloides papillosus 174720 Nematoda Nematoda 54.7 0.008   NTclustered gi|687023049|emb|LM526711.1| 174720 g51311 i0 100 0.478405315614618 29 0 10 0 168 196 4390 4418 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0001053 blastn 144 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
2116167 2116167 PRJNA853194_S_NODE_61002_length_280_cov_4.333333_g59911_i0 PRJNA853194 61002 280 4.333333 12.1333324 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.007   NTclustered gi|1557394408|emb|LR031564.1| 45931 g59911 i0 100 0.103571428571429 29 0 10 0 1 29 23 51 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
2116615 2116615 PRJNA853194_S_NODE_86102_length_238_cov_3.272727_g85011_i0 PRJNA853194 86102 238 3.272727 7.78909026 Strongyloides papillosus 174720 Nematoda Nematoda 54.7 0.006   NTclustered gi|687022784|emb|LM525896.1| 174720 g85011 i0 100 0.121848739495798 29 0 12 0 192 220 23280 23252 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000270 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
5942920 5942920 PRJNA853194_S_NODE_11465_length_562_cov_1086.098160_g701_i1 PRJNA853194 11465 562 1086.09816 6103.8716592 Strongyloides papillosus 174720 Nematoda Nematoda 202 5.199999999999998e-47   NTclustered gi|690018840|emb|LM526136.1| 174720 g701 i1 79.649 4.79181494661922 285 54 50 4 112 394 7759 8041 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000493 blastn 2693 202 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
5943601 5943601 PRJNA853194_S_NODE_41745_length_333_cov_1.103846_g40654_i0 PRJNA853194 41745 333 1.103846 3.67580718 Pratylenchus vulnus 45931 Nematoda Nematoda 56.5 0.002   NTclustered gi|1557394408|emb|LR031564.1| 45931 g40654 i0 100 0.0900900900900901 30 0 9 0 304 333 52 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 30 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
8494128 8494128 PRJNA853194_S_NODE_85827_length_240_cov_2.730539_g84736_i0 PRJNA853194 85827 240 2.730539 6.5532936 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.006   NTclustered gi|1557394408|emb|LR031564.1| 45931 g84736 i0 100 0.120833333333333 29 0 12 0 1 29 23 51 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
9768595 9768595 PRJNA853194_S_NODE_49768_length_308_cov_1.387234_g48677_i0 PRJNA853194 49768 308 1.387234 4.27268072 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.008   NTclustered gi|1557394408|emb|LR031564.1| 45931 g48677 i0 100 0.0941558441558442 29 0 9 0 1 29 23 51 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
11044856 11044856 PRJNA853194_S_NODE_84669_length_242_cov_0.911243_g83578_i0 PRJNA853194 84669 242 0.911243 2.20520806 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.022   NTclustered gi|1557394408|emb|LR031564.1| 45931 g83578 i0 100 0.115702479338843 28 0 12 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
12319106 12319106 PRJNA853194_S_NODE_17810_length_469_cov_0.936869_g16721_i0 PRJNA853194 17810 469 0.936869 4.39391561 Caenorhabditis elegans 6239 Nematoda Nematoda 54.7 0.013   NTclustered gi|687865596|emb|LK927677.1| 6239 g16721 i0 92.308 0.181236673773987 39 2 8 1 431 469 95397 95360 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000129 blastn 85 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
13593782 13593782 PRJNA853194_S_NODE_24771_length_412_cov_1.212389_g23680_i0 PRJNA853194 24771 412 1.212389 4.99504268 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.04   NTclustered gi|687865958|emb|LK928038.1| 6239 g23680 i0 100 0.203883495145631 28 0 7 0 195 222 60775 60802 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000427 blastn 84 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
13594215 13594215 PRJNA853194_S_NODE_46131_length_318_cov_7.914286_g45040_i0 PRJNA853194 46131 318 7.914286 25.16742948 Pratylenchus vulnus 45931 Nematoda Nematoda 56.5 0.002   NTclustered gi|1557394408|emb|LR031564.1| 45931 g45040 i0 100 0.0943396226415094 30 0 9 0 1 30 23 52 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 30 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
14868243 14868243 PRJNA853194_S_NODE_3672_length_911_cov_6.051313_g2953_i0 PRJNA853194 3672 911 6.051313 55.12746143 Strongyloides papillosus 174720 Nematoda Nematoda 54.7 0.026   NTclustered gi|687022656|emb|LM525570.1| 174720 g2953 i0 96.97 0.0362239297475302 33 0 4 1 128 159 435638 435670 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000005 blastn 33 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
16143206 16143206 PRJNA853194_S_NODE_43573_length_326_cov_14.667984_g42482_i0 PRJNA853194 43573 326 14.667984 47.81762784 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.031   NTclustered gi|1557394408|emb|LR031564.1| 45931 g42482 i0 100 0.0858895705521472 28 0 9 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
17418074 17418074 PRJNA853194_S_NODE_17654_length_470_cov_7.010076_g16565_i0 PRJNA853194 17654 470 7.010076 32.9473572 Caenorhabditis elegans 6239 Nematoda Nematoda 65.8 5.87e-6   NTclustered gi|1734331700|ref|NM_001322777.2| 6239 g16565 i0 91.489 7.69574468085106 47 4 10 0 1 47 1243 1197 Caenorhabditis elegans Ig-like domain-containing protein (spe-45), partial mRNA blastn 3617 65.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
17418134 17418134 PRJNA853194_S_NODE_20494_length_443_cov_3.656757_g19403_i0 PRJNA853194 20494 443 3.656757 16.19943351 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.043   NTclustered gi|1557394408|emb|LR031564.1| 45931 g19403 i0 100 0.0632054176072235 28 0 6 0 416 443 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
19967835 19967835 PRJNA853194_S_NODE_956_length_1482_cov_382.024840_g701_i0 PRJNA853194 956 1482 382.02484 5661.6081288 Strongyloides papillosus 174720 Nematoda Nematoda 202 1.4299999999999999e-46   NTclustered gi|690018840|emb|LM526136.1| 174720 g701 i0 79.649 1.81713900134953 285 54 19 4 112 394 7759 8041 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000493 blastn 2693 202 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
21241957 21241957 PRJNA853194_S_NODE_19177_length_455_cov_2.277487_g18087_i0 PRJNA853194 19177 455 2.277487 10.36256585 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.044   NTclustered gi|1557394408|emb|LR031564.1| 45931 g18087 i0 100 0.0615384615384615 28 0 6 0 428 455 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
22516914 22516914 PRJNA853194_S_NODE_32038_length_371_cov_2.798658_g30947_i0 PRJNA853194 32038 371 2.798658 10.38302118 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.01   NTclustered gi|1557394408|emb|LR031564.1| 45931 g30947 i0 100 0.078167115902965 29 0 8 0 1 29 23 51 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
23793211 23793211 PRJNA853194_S_NODE_72819_length_257_cov_2.081522_g71728_i0 PRJNA853194 72819 257 2.081522 5.34951154 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.023   NTclustered gi|1557394408|emb|LR031564.1| 45931 g71728 i0 100 0.108949416342412 28 0 11 0 230 257 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
23793340 23793340 PRJNA853194_S_NODE_79519_length_248_cov_0.862857_g78428_i0 PRJNA853194 79519 248 0.862857 2.13988536 Strongyloides papillosus 174720 Nematoda Nematoda 58.4 4.82e-4   NTclustered gi|690018459|emb|LM525697.1| 174720 g78428 i0 100 0.125 31 0 13 0 35 65 23216 23186 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000094 blastn 31 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;