RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA853194" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA853194 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9768738 9768738 PRJNA853194_S_NODE_57008_length_289_cov_2.472222_g55917_i0 PRJNA853194 57008 289 2.472222 7.14472158 Sebaldella termitidis 826 Bacteria Bacteria 54.7 0.007   NTclustered gi|268612520|gb|CP001739.1| 526218 g55917 i0 100 0.100346020761246 29 0 10 0 206 234 1412398 1412426 Sebaldella termitidis ATCC 33386, complete genome blastn 29 54.7 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Sebaldella Sebaldella termitidis
22517051 22517051 PRJNA853194_S_NODE_38958_length_342_cov_4.520446_g37867_i0 PRJNA853194 38958 342 4.520446 15.45992532 Fusobacterium canifelinum 285729 Bacteria Bacteria 52.8 0.032   NTclustered gi|2704942200|gb|CP077195.1| 285729 g37867 i0 100 0.0818713450292398 28 0 8 0 16 43 1688365 1688338 Fusobacterium canifelinum strain SB044 chromosome, complete genome blastn 28 52.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium canifelinum
22517210 22517210 PRJNA853194_S_NODE_47138_length_316_cov_0.950617_g46047_i0 PRJNA853194 47138 316 0.950617 3.00394972 Fusobacterium sp. oral taxon 203 671211 Bacteria Bacteria 60.2 1.77e-4   NTclustered gi|1229037590|gb|CP016200.1| 671211 g46047 i0 88.462 0.164556962025316 52 2 16 4 233 282 1686219 1686170 Fusobacterium sp. oral taxon 203 strain W7671 chromosome, partial genome blastn 52 60.2 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp. oral taxon 203

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;