RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA853194" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA853194 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
840031 840031 PRJNA853194_S_NODE_26201_length_402_cov_3.577508_g25110_i0 PRJNA853194 26201 402 3.577508 14.38158216 Dinema validum 2704078 Euglenozoa other_Eukaryota 52.8 0.039   NTclustered gi|1803019085|gb|MT007857.1| 2704078 g25110 i0 100 0.0696517412935323 28 0 7 0 373 400 35 8 Dinema validum isolate AB2_2 small subunit ribosomal RNA gene, partial sequence blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemataceae Dinema Dinema validum
11044561 11044561 PRJNA853194_S_NODE_69169_length_264_cov_1.460733_g68078_i0 PRJNA853194 69169 264 1.460733 3.85633512 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 54.7 0.007   NTclustered gi|290997461|ref|XM_002681254.1| 5762 g68078 i0 100 0.109848484848485 29 0 11 0 65 93 4483 4455 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_56974), partial mRNA blastn 29 54.7 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
16143852 16143852 PRJNA853194_S_NODE_76713_length_251_cov_0.865169_g75622_i0 PRJNA853194 76713 251 0.865169 2.17157419 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 52.8 0.023   NTclustered gi|2119429064|ref|XM_044701777.1| 5763 g75622 i0 100 0.223107569721116 28 0 11 0 58 85 643 670 Naegleria fowleri uncharacterized protein (FDP41_011376), partial mRNA blastn 56 52.8 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;