RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA853194" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA853194 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2116552 2116552 PRJNA853194_S_NODE_82902_length_244_cov_0.900585_g81811_i0 PRJNA853194 82902 244 0.900585 2.1974274 Dictyostelium purpureum 5786 Evosea other_Eukaryota 52.8 0.022   NTclustered gi|330802693|ref|XM_003289301.1| 5786 g81811 i0 96.875 0.131147540983607 32 0 13 1 58 88 1779 1748 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_98331), mRNA blastn 32 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
4668699 4668699 PRJNA853194_S_NODE_35384_length_356_cov_2.409894_g34293_i0 PRJNA853194 35384 356 2.409894 8.57922264 Dictyostelium purpureum 5786 Evosea other_Eukaryota 56.5 0.003   NTclustered gi|330801194|ref|XM_003288567.1| 5786 g34293 i0 94.595 0.348314606741573 37 1 10 1 308 344 377 412 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_94691), mRNA blastn 124 56.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
14868442 14868442 PRJNA853194_S_NODE_46052_length_319_cov_1.227642_g44961_i0 PRJNA853194 46052 319 1.227642 3.91617798 Heterostelium album 2086695 Evosea other_Eukaryota 52.8 0.03   NTclustered gi|1160561578|ref|XM_020579004.1| 670386 g44961 i0 100 0.0877742946708464 28 0 9 0 180 207 275 302 Polysphondylium pallidum PN500 hypothetical protein partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
22517347 22517347 PRJNA853194_S_NODE_53838_length_297_cov_1.531250_g52747_i0 PRJNA853194 53838 297 1.53125 4.5478125 Cavenderia fasciculata 261658 Evosea other_Eukaryota 54.7 0.008   NTclustered gi|470248543|ref|XM_004357758.1| 261658 g52747 i0 100 0.0976430976430976 29 0 10 0 24 52 527 555 Cavenderia fasciculata GTPase (DFA_00099), partial mRNA blastn 29 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;