RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA851399" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA851399 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
839381 839381 PRJNA851399_P_NODE_30681_length_165_cov_0.879310_g30228_i0 PRJNA851399 30681 165 0.87931 1.4508615 Trypanosoma conorhini 83891 Euglenozoa other_Eukaryota 56.5 0.001   NTclustered gi|1673143899|ref|XM_029374735.1| 83891 g30228 i0 96.97 0.2 33 1 20 0 132 164 646 614 Trypanosoma conorhini vesicle-associated membrane protein (Tco025E_07876), partial mRNA blastn 33 56.5 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma conorhini
2114649 2114649 PRJNA851399_P_NODE_19662_length_178_cov_1.581395_g19209_i0 PRJNA851399 19662 178 1.581395 2.8148831 Trypanosoma vivax 5699 Euglenozoa other_Eukaryota 329 6.21e-86   NTclustered gi|340058162|emb|HE573027.1| 1055687 g19209 i0 100 4.61797752808989 178 0 100 0 1 178 9640 9463 Trypanosoma vivax Y486 annotated genomic contig, chromosome 11 blastn 822 329 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma vivax
25065576 25065576 PRJNA851399_P_NODE_31260_length_165_cov_0.879310_g30807_i0 PRJNA851399 31260 165 0.87931 1.4508615 Trypanosoma vivax 5699 Euglenozoa other_Eukaryota 300 4.46e-77   NTclustered gi|340053916|emb|HE573022.1| 1055687 g30807 i0 99.394 1 165 1 100 0 1 165 1071952 1071788 Trypanosoma vivax Y486 annotated genomic contig, chromosome 6 blastn 165 300 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma vivax

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;