RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA849822" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA849822 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8491569 8491569 PRJNA849822_P_NODE_40627_length_245_cov_0.906977_g40453_i0 PRJNA849822 40627 245 0.906977 2.22209365 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 436 5.229999999999999e-118   NTclustered gi|2874254019|emb|OY970344.1| 412056 g40453 i0 98.776 97.3510204081633 245 3 100 0 1 245 1434662 1434906 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04580.bin.c.3 genome assembly, chromosome: 1 blastn 23851 436 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
13592299 13592299 PRJNA849822_P_NODE_24971_length_290_cov_1.566820_g24797_i0 PRJNA849822 24971 290 1.56682 4.543778 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 470 6.259999999999999e-128   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g24797 i0 95.862 39.6068965517241 290 12 100 0 1 290 3557879 3557590 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 11486 470 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
25064964 25064964 PRJNA849822_P_NODE_680_length_1832_cov_7.395679_g157_i1 PRJNA849822 680 1832 7.395679 135.48883928 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 2566 0   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g157 i1 92.044 98.1479257641921 1835 131 99 14 5 1832 3558031 3556205 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 179807 2566 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;