RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA849822" and tax_phylum = "Porifera"

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tax_superkingdom 1

tax_phylum 1

  • Porifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA849822 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3389486 3389486 PRJNA849822_P_NODE_5843_length_645_cov_4.828671_g5674_i0 PRJNA849822 5843 645 4.828671 31.14492795 Sycon ciliatum 27933 Porifera other_Eukaryota 331 7.35e-86   NTclustered gi|2732929399|ref|XM_065331779.1| 27933 g5674 i0 82.973 54.5441860465116 370 60 57 3 103 470 188 556 PREDICTED: Sycon ciliatum small ribosomal subunit protein uS12 (LOC135818406), mRNA blastn 35181 331 1 Eukaryota Opisthokonta Metazoa Porifera Calcarea Leucosolenida Sycettidae Sycon Sycon ciliatum
7216907 7216907 PRJNA849822_P_NODE_7006_length_582_cov_2.583497_g6837_i0 PRJNA849822 7006 582 2.583497 15.03595254 Sycon ciliatum 27933 Porifera other_Eukaryota 351 5.059999999999999e-92   NTclustered gi|2732923973|ref|XM_065328925.1| 27933 g6837 i0 82.238 69.6975945017182 411 70 70 2 135 542 472 62 PREDICTED: Sycon ciliatum histone H3 (LOC135815608), mRNA blastn 40564 351 1 Eukaryota Opisthokonta Metazoa Porifera Calcarea Leucosolenida Sycettidae Sycon Sycon ciliatum
11042190 11042190 PRJNA849822_P_NODE_17489_length_347_cov_1.102190_g17315_i0 PRJNA849822 17489 347 1.10219 3.8245993 Sycon ciliatum 27933 Porifera other_Eukaryota 222 2.37e-53   NTclustered gi|2732934570|ref|XM_065334361.1| 27933 g17315 i0 80.065 6.30835734870317 306 55 87 6 35 337 4396 4094 PREDICTED: Sycon ciliatum clathrin heavy chain 1-like (LOC135821305), mRNA blastn 2189 222 1 Eukaryota Opisthokonta Metazoa Porifera Calcarea Leucosolenida Sycettidae Sycon Sycon ciliatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;