RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA849822" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA849822 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3785470 3785470 PRJNA849822_P_NODE_34623_length_252_cov_0.871508_g34449_i0 PRJNA849822 34623 252 0.871508 2.19620016 Schistosoma 6181 Platyhelminthes Platyhelminthes 56.5 0.002   NTclustered gi|1084289396|ref|XM_018793273.1| 6183 g34449 i0 100 0.238095238095238 30 0 12 0 129 158 5258 5287 Schistosoma mansoni protein kinase partial mRNA blastn 60 56.5 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni
11042187 11042187 PRJNA849822_P_NODE_17369_length_348_cov_1.418182_g17195_i0 PRJNA849822 17369 348 1.418182 4.93527336 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 56.5 0.003   NTclustered gi|690475098|emb|LN015754.1| 99802 g17195 i0 100 0.336206896551724 30 0 9 0 302 331 3527 3498 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_scaffold0015534 blastn 117 56.5 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
19965075 19965075 PRJNA849822_P_NODE_28776_length_272_cov_1.567839_g28602_i0 PRJNA849822 28776 272 1.567839 4.26452208 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 52.8 0.025   NTclustered gi|690485836|emb|LN029546.1| 99802 g28602 i0 96.774 0.113970588235294 31 1 11 0 201 231 1886 1856 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_scaffold0028980 blastn 31 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
22515472 22515472 PRJNA849822_P_NODE_41218_length_244_cov_0.912281_g41044_i0 PRJNA849822 41218 244 0.912281 2.22596564 Schistosoma haematobium 6185 Platyhelminthes Platyhelminthes 60.2 1.32e-4   NTclustered gi|2318771736|ref|XM_051217647.1| 6185 g41044 i0 100 0.254098360655738 32 0 13 0 26 57 1564 1533 Schistosoma haematobium T-cell specific, HMG-box (TCF7), mRNA blastn 62 60.2 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma haematobium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;