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contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA849822" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 11 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA849822 · 11 ✖

analysis 1

  • blastn · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4666960 4666960 PRJNA849822_P_NODE_1244_length_1444_cov_5.986871_g1156_i0 PRJNA849822 1244 1444 5.986871 86.45041724 Strongyloides ratti 34506 Nematoda Nematoda 1090 0   NTclustered gi|1376148845|ref|XM_024642710.1| 34506 g1156 i0 81.722 92.2596952908587 1324 226 91 12 75 1390 1316 1 Strongyloides ratti Tubulin beta-2A chain (SRAE_2000390300), partial mRNA blastn 133223 1090 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
7611614 7611614 PRJNA849822_P_NODE_8406_length_522_cov_4.567929_g8234_i0 PRJNA849822 8406 522 4.567929 23.84458938 Rhabditida 6236 Nematoda Nematoda 409 2.64e-109   NTclustered gi|256709235|gb|GQ422270.1| 669109 g8234 i0 84.211 76.1954022988506 418 64 80 2 58 474 435 19 Mononchoides sp. RS5441 small subunit ribosomal protein 14 (rps-14) mRNA, partial cds blastn 39774 409 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Mononchoides Mononchoides sp. RS5441
8491338 8491338 PRJNA849822_P_NODE_12707_length_412_cov_2.445428_g12533_i0 PRJNA849822 12707 412 2.445428 10.07516336 Strongyloides ratti 34506 Nematoda Nematoda 364 4.4799999999999986e-96   NTclustered gi|1376154927|ref|XM_024651418.1| 34506 g12533 i0 83.042 69.4538834951456 401 68 97 0 11 411 1 401 Strongyloides ratti Histone H3 (SRAE_X000165500), partial mRNA blastn 28615 364 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
8491494 8491494 PRJNA849822_P_NODE_30047_length_267_cov_0.922680_g29873_i0 PRJNA849822 30047 267 0.92268 2.4635556 Strongyloides ratti 34506 Nematoda Nematoda 250 8.07e-62   NTclustered gi|1376147859|ref|XM_024654603.1| 34506 g29873 i0 83.521 181.779026217228 267 44 100 0 1 267 1509 1243 Strongyloides ratti Polyubiquitin-C (SRAE_2000341300), partial mRNA blastn 48535 250 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
11042124 11042124 PRJNA849822_P_NODE_10029_length_472_cov_2.874687_g9856_i0 PRJNA849822 10029 472 2.874687 13.56852264 Strongyloides ratti 34506 Nematoda Nematoda 381 5.149999999999999e-101   NTclustered gi|1376154927|ref|XM_024651418.1| 34506 g9856 i0 83.911 80.3601694915254 404 59 85 3 2 402 401 1 Strongyloides ratti Histone H3 (SRAE_X000165500), partial mRNA blastn 37930 381 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
13592261 13592261 PRJNA849822_P_NODE_20411_length_320_cov_2.291498_g20237_i0 PRJNA849822 20411 320 2.291498 7.3327936 Pristionchus sp. 15 RS5229 452809 Nematoda Nematoda 182 3.669999999999999e-41   NTclustered gi|150984457|gb|EF634871.1| 452809 g20237 i0 77.524 25.278125 307 65 95 3 2 306 320 16 Pristionchus sp. 15 RS5229 small subunit ribosomal protein 8 (rps-8) mRNA, partial cds blastn 8089 182 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 15 RS5229
14866539 14866539 PRJNA849822_P_NODE_16592_length_356_cov_1.653710_g16418_i0 PRJNA849822 16592 356 1.65371 5.8872076 Caenorhabditis briggsae 6238 Nematoda Nematoda 52.8 0.034   NTclustered gi|11094918|gb|AC084468.1|AC084468 6238 g16418 i0 96.774 0.0870786516853933 31 1 9 0 50 80 86097 86127 Caenorhabditis briggsae cosmid CB044J14, complete sequence blastn 31 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
16141391 16141391 PRJNA849822_P_NODE_32173_length_258_cov_1.264865_g31999_i0 PRJNA849822 32173 258 1.264865 3.2633517 Strongyloides ratti 34506 Nematoda Nematoda 169 2.23e-37   NTclustered gi|1376146183|ref|XM_024653652.1| 34506 g31999 i0 78.988 68.0581395348837 257 47 98 7 6 258 1149 1402 Strongyloides ratti ATP synthase subunit beta (SRAE_2000256800), partial mRNA blastn 17559 169 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
17416753 17416753 PRJNA849822_P_NODE_16054_length_362_cov_2.283737_g15880_i0 PRJNA849822 16054 362 2.283737 8.26712794 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.034   NTclustered gi|687022746|emb|LM525660.1| 174720 g15880 i0 100 0.0773480662983425 28 0 8 0 40 67 82620 82647 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000063 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
19965220 19965220 PRJNA849822_P_NODE_7036_length_580_cov_55.514793_g6867_i0 PRJNA849822 7036 580 55.514793 321.9857994 Strongyloides ratti 34506 Nematoda Nematoda 438 3.7599999999999996e-118   NTclustered gi|1376147859|ref|XM_024654603.1| 34506 g6867 i0 85.151 156.8 431 61 74 3 151 580 469 41 Strongyloides ratti Polyubiquitin-C (SRAE_2000341300), partial mRNA blastn 90944 438 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
21240638 21240638 PRJNA849822_P_NODE_22937_length_302_cov_1.777293_g22763_i0 PRJNA849822 22937 302 1.777293 5.36742486 Strongyloides ratti 34506 Nematoda Nematoda 148 3.4899999999999996e-31   NTclustered gi|1376153739|ref|XM_024650251.1| 34506 g22763 i0 81.25 1.28476821192053 192 28 62 8 80 267 10 197 Strongyloides ratti Ras-like protein 1 (SRAE_X000105700), partial mRNA blastn 388 148 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;