RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA849822" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA849822 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11437272 11437272 PRJNA849822_P_NODE_35089_length_251_cov_0.876404_g34915_i0 PRJNA849822 35089 251 0.876404 2.19977404 Corallococcus 83461 Bacteria Bacteria 71.3 6.28e-8   NTclustered gi|1561763003|gb|CP034669.1| 184914 g34915 i0 88.333 1.85657370517928 60 5 24 2 190 248 4826220 4826162 Corallococcus coralloides strain B035 chromosome, complete genome blastn 466 71.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus coralloides
12317883 12317883 PRJNA849822_P_NODE_40670_length_245_cov_0.906977_g40496_i0 PRJNA849822 40670 245 0.906977 2.22209365 Sandaracinus amylolyticus 927083 Bacteria Bacteria 52.8 0.022   NTclustered gi|816953346|gb|CP011125.1| 927083 g40496 i0 100 0.114285714285714 28 0 11 0 179 206 8860999 8861026 Sandaracinus amylolyticus strain DSM 53668, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae Sandaracinus Sandaracinus amylolyticus
19965169 19965169 PRJNA849822_P_NODE_43216_length_242_cov_0.923077_g43042_i0 PRJNA849822 43216 242 0.923077 2.23384634 Labilithrix luteola 1391654 Bacteria Bacteria 340 4.15e-89   NTclustered gi|913610804|gb|CP012333.1| 1391654 g43042 i0 92.766 181.632231404959 235 17 97 0 8 242 3943294 3943060 Labilithrix luteola strain DSM 27648, complete genome blastn 43955 340 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;