RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA849822" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA849822 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13592422 13592422 PRJNA849822_P_NODE_41071_length_244_cov_0.912281_g40897_i0 PRJNA849822 41071 244 0.912281 2.22596564 Tepidiformaceae bacterium 3022862 Bacteria Bacteria 189 1.6099999999999996e-43   NTclustered gi|2893358447|emb|OZ220739.1| 3022862 g40897 i0 81.938 176.274590163934 227 37 92 4 1 225 980156 979932 MAG: Tepidiformaceae bacterium isolate ddb3cf28-bb63-44a4-8fd1-08202229d10a genome assembly, chromosome: 1 blastn 43011 189 1 Bacteria   Bacillati Chloroflexota Tepidiformia Tepidiformales Tepidiformaceae   Tepidiformaceae bacterium
18690112 18690112 PRJNA849822_P_NODE_8015_length_537_cov_1.314655_g7843_i0 PRJNA849822 8015 537 1.314655 7.05969735 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 54.7 0.015   NTclustered gi|2621704111|emb|OY761558.1| 2026734 g7843 i0 100 0.0540037243947858 29 0 5 0 425 453 1618326 1618298 MAG: Dehalococcoidia bacterium isolate 6ae818db-717c-4d07-8374-be93c3d6d717 genome assembly, chromosome: 1 blastn 29 54.7 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;