RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA849822" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA849822 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9766776 9766776 PRJNA849822_P_NODE_39888_length_246_cov_0.901734_g39714_i0 PRJNA849822 39888 246 0.901734 2.21826564 Wolinella succinogenes 844 Bacteria Bacteria 449 6.74e-122   NTclustered gi|34482172|emb|BX571657.1| 844 g39714 i0 99.593 2 246 1 100 0 1 246 49659 49904 Wolinella succinogenes, complete genome; segment 1/7 blastn 492 449 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Wolinella Wolinella succinogenes
12317803 12317803 PRJNA849822_P_NODE_29870_length_267_cov_1.742268_g29696_i0 PRJNA849822 29870 267 1.742268 4.6518555599999996 Helicobacter pylori 210 Bacteria Bacteria 54.7 0.007   NTclustered gi|2642434087|gb|CP078476.1| 210 g29696 i0 94.286 0.741573033707865 35 2 13 0 108 142 1074690 1074724 Helicobacter pylori strain HpGP-MMR-011 chromosome, complete genome blastn 198 54.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
16141346 16141346 PRJNA849822_P_NODE_26653_length_282_cov_1.330144_g26479_i0 PRJNA849822 26653 282 1.330144 3.75100608 Wolinella succinogenes 844 Bacteria Bacteria 516 7.67e-142   NTclustered gi|34483865|emb|BX571662.1| 844 g26479 i0 99.645 2 282 1 100 0 1 282 309828 310109 Wolinella succinogenes, complete genome; segment 6/7 blastn 564 516 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Wolinella Wolinella succinogenes
22515457 22515457 PRJNA849822_P_NODE_39018_length_247_cov_0.896552_g38844_i0 PRJNA849822 39018 247 0.896552 2.21448344 Wolinella succinogenes 844 Bacteria Bacteria 451 1.88e-122   NTclustered gi|296081|emb|X65189.1| 844 g38844 i0 99.595 3.27125506072874 247 1 100 0 1 247 1628 1382 W.succinogenes genes hydA, hydB, hydC for hydrogenase blastn 808 451 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Wolinella Wolinella succinogenes

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;