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contig_metadata

21 rows where analysis = "blastn", bioproject = "PRJNA849822" and tax_kingdom = "Orthornavirae"

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tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 21 ✖

bioproject 1

  • PRJNA849822 · 21 ✖

analysis 1

  • blastn · 21 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3389227 3389227 PRJNA849822_P_NODE_14903_length_377_cov_1.282895_g14729_i0 PRJNA849822 14903 377 1.282895 4.83651415 Betacoronavirus pandemicum 3418604 Viruses Viruses 697 0   NTclustered gi|2560551729|gb|OR418642.1| 2697049 g14729 i0 100 100 377 0 100 0 1 377 6182 6558 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/CA-LACPHL-AY00896/2022 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes, complete cds blastn 37700 697 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
4666936 4666936 PRJNA849822_P_NODE_10604_length_457_cov_1.510417_g10431_i0 PRJNA849822 10604 457 1.510417 6.90260569 Betacoronavirus pandemicum 3418604 Viruses Viruses 845 0   NTclustered gi|2499447400|emb|OX492971.1| 2697049 g10431 i0 100 100 457 0 100 0 1 457 18123 18579 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 45700 845 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
7216723 7216723 PRJNA849822_P_NODE_24826_length_291_cov_1.362385_g24652_i0 PRJNA849822 24826 291 1.362385 3.96454035 Betacoronavirus pandemicum 3418604 Viruses Viruses 538 1.6999999999999994e-148   NTclustered gi|2105696498|gb|OK358740.1| 2697049 g24652 i0 100 100 291 0 100 0 1 291 9591 9881 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/TX-DSHS-9158/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), and ORF6 protein (ORF6) genes, complete cds; ORF7a protein (ORF7a) and ORF7b (ORF7b) genes, partial cds; ORF8 gene, complete sequence; and nucleocapsid phosphoprotein (N) and ORF10 protein (ORF10) genes, complete cds blastn 29100 538 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
7216741 7216741 PRJNA849822_P_NODE_26_length_4288_cov_2.997628_g24_i0 PRJNA849822 26 4288 2.997628 128.53828864 Potexvirus trifolii 3433859 Viruses Viruses 5304 0   NTclustered gi|2273760991|gb|OL472250.1| 12188 g24 i0 88.995 22.9221082089552 4289 470 100 2 1 4288 3 4290 MAG: White clover mosaic virus isolate TUR20SW polyprotein, 25 kDa triple gene block protein 1, 12 kDa triple gene block protein 2, and 7 kDa triple gene block protein 3 genes, complete cds; and coat protein gene, partial cds blastn 98290 5304 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus trifolii
7216770 7216770 PRJNA849822_P_NODE_31446_length_261_cov_1.015957_g31272_i0 PRJNA849822 31446 261 1.015957 2.65164777 Betacoronavirus pandemicum 3418604 Viruses Viruses 483 7.12e-132   NTclustered gi|2316342856|gb|OP624554.1| 2697049 g31272 i0 100 100 261 0 100 0 1 261 24393 24133 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/OH-CDC-QDX41755282/2022, complete genome blastn 26100 483 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
9766700 9766700 PRJNA849822_P_NODE_29428_length_269_cov_1.591837_g29254_i0 PRJNA849822 29428 269 1.591837 4.28204153 Betacoronavirus pandemicum 3418604 Viruses Viruses 497 2.63e-136   NTclustered gi|2316342856|gb|OP624554.1| 2697049 g29254 i0 100 100 269 0 100 0 1 269 13003 12735 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/OH-CDC-QDX41755282/2022, complete genome blastn 26900 497 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
11042194 11042194 PRJNA849822_P_NODE_17869_length_343_cov_0.811111_g17695_i0 PRJNA849822 17869 343 0.811111 2.78211073 Betacoronavirus pandemicum 3418604 Viruses Viruses 634 2.5299999999999996e-177   NTclustered gi|2316342856|gb|OP624554.1| 2697049 g17695 i0 100 100 343 0 100 0 1 343 22201 21859 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/OH-CDC-QDX41755282/2022, complete genome blastn 34300 634 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
11042214 11042214 PRJNA849822_P_NODE_19709_length_326_cov_1.296443_g19535_i0 PRJNA849822 19709 326 1.296443 4.22640418 Phlebovirus sp. 206378 Viruses Viruses 54.7 0.009   NTclustered gi|1997312915|gb|MW370443.1| 206378 g19535 i0 92.105 0.116564417177914 38 3 12 0 34 71 2324 2361 Phlebovirus sp. isolate SXWX1916-4 segment M membrane glycoprotein gene, complete cds blastn 38 54.7 1 Viruses   Orthornavirae Negarnaviricota Bunyaviricetes Hareavirales Phenuiviridae Phlebovirus Phlebovirus sp.
14866617 14866617 PRJNA849822_P_NODE_28272_length_274_cov_3.104478_g28098_i0 PRJNA849822 28272 274 3.104478 8.50626972 Betacoronavirus pandemicum 3418604 Viruses Viruses 507 4.47e-139   NTclustered gi|2028980905|gb|MZ002360.1| 2697049 g28098 i0 100 100 274 0 100 0 1 274 3609 3336 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WI-CDC-LC0038184/2021, complete genome blastn 27400 507 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
18689946 18689946 PRJNA849822_P_NODE_27855_length_276_cov_2.044335_g27681_i0 PRJNA849822 27855 276 2.044335 5.6423646 Potexvirus trifolii 3433859 Viruses Viruses 427 3.61e-115   NTclustered gi|1078555000|dbj|LC190455.1| 12188 g27681 i0 94.565 35.231884057971 276 15 100 0 1 276 155 430 White clover mosaic virus CP gene for coat protein, complete cds, isolate: Namwon blastn 9724 427 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus trifolii
18689962 18689962 PRJNA849822_P_NODE_30775_length_263_cov_4.800000_g30601_i0 PRJNA849822 30775 263 4.8 12.624 Betacoronavirus pandemicum 3418604 Viruses Viruses 486 5.5499999999999986e-133   NTclustered gi|2499447400|emb|OX492971.1| 2697049 g30601 i0 100 100 263 0 100 0 1 263 7405 7143 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 26300 486 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
19085066 19085066 PRJNA849822_P_NODE_41375_length_244_cov_0.912281_g41201_i0 PRJNA849822 41375 244 0.912281 2.22596564 Potyvirus 12195 Viruses Viruses 401 1.8999999999999998e-107   NTclustered gi|1735126414|gb|MK292120.1| 12198 g41201 i0 96.311 22.4754098360656 244 9 100 0 1 244 644 887 Clover yellow vein virus isolate IA-2016, complete genome blastn 5484 401 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Potyvirus Potyvirus trifolii
19964979 19964979 PRJNA849822_P_NODE_17456_length_347_cov_1.492701_g17282_i0 PRJNA849822 17456 347 1.492701 5.17967247 Betacoronavirus pandemicum 3418604 Viruses Viruses 641 1.5299999999999996e-179   NTclustered gi|2316342856|gb|OP624554.1| 2697049 g17282 i0 100 100 347 0 100 0 1 347 23899 23553 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/OH-CDC-QDX41755282/2022, complete genome blastn 34700 641 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
19965086 19965086 PRJNA849822_P_NODE_30676_length_264_cov_1.345550_g30502_i0 PRJNA849822 30676 264 1.34555 3.552252 Betacoronavirus pandemicum 3418604 Viruses Viruses 483 7.219999999999998e-132   NTclustered gi|2316342856|gb|OP624554.1| 2697049 g30502 i0 99.621 100 264 1 100 0 1 264 20196 19933 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/OH-CDC-QDX41755282/2022, complete genome blastn 26400 483 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
19965089 19965089 PRJNA849822_P_NODE_31056_length_262_cov_1.603175_g30882_i0 PRJNA849822 31056 262 1.603175 4.2003185 Betacoronavirus pandemicum 3418604 Viruses Viruses 484 1.99e-132   NTclustered gi|2499447400|emb|OX492971.1| 2697049 g30882 i0 100 100 262 0 100 0 1 262 25691 25952 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 26200 484 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
21240696 21240696 PRJNA849822_P_NODE_31177_length_262_cov_1.121693_g31003_i0 PRJNA849822 31177 262 1.121693 2.93883566 Betacoronavirus pandemicum 3418604 Viruses Viruses 479 9.249999999999999e-131   NTclustered gi|2529113455|emb|OY166144.1| 2697049 g31003 i0 99.618 99.9923664122137 262 1 100 0 1 262 17793 18054 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 26198 479 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
22911143 22911143 PRJNA849822_P_NODE_36038_length_250_cov_0.881356_g35864_i0 PRJNA849822 36038 250 0.881356 2.20339 Cucumovirus 12304 Viruses Viruses 359 1.19e-94   NTclustered gi|124294729|gb|EF202595.1| 12305 g35864 i0 92.742 99.2 248 18 99 0 3 250 354 107 Cucumber mosaic virus isolate Tsh segment RNA1, complete sequence blastn 24800 359 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Cucumovirus Cucumovirus CMV
23790719 23790719 PRJNA849822_P_NODE_10219_length_467_cov_2.274112_g10046_i0 PRJNA849822 10219 467 2.274112 10.62010304 Betacoronavirus pandemicum 3418604 Viruses Viruses 863 0   NTclustered gi|2316342856|gb|OP624554.1| 2697049 g10046 i0 100 100 467 0 100 0 1 467 23448 22982 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/OH-CDC-QDX41755282/2022, complete genome blastn 46700 863 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
23790827 23790827 PRJNA849822_P_NODE_22379_length_306_cov_2.004292_g22205_i0 PRJNA849822 22379 306 2.004292 6.13313352 Betacoronavirus pandemicum 3418604 Viruses Viruses 566 8.239999999999998e-157   NTclustered gi|2028980905|gb|MZ002360.1| 2697049 g22205 i0 100 100 306 0 100 0 1 306 8847 8542 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WI-CDC-LC0038184/2021, complete genome blastn 30600 566 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
23790889 23790889 PRJNA849822_P_NODE_29899_length_267_cov_1.608247_g29725_i0 PRJNA849822 29899 267 1.608247 4.29401949 Betacoronavirus pandemicum 3418604 Viruses Viruses 494 3.38e-135   NTclustered gi|2499447400|emb|OX492971.1| 2697049 g29725 i0 100 100 267 0 100 0 1 267 1897 2163 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 26700 494 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
25064761 25064761 PRJNA849822_P_NODE_2380_length_1067_cov_2.573441_g2254_i0 PRJNA849822 2380 1067 2.573441 27.45861547 Potexvirus trifolii 3433859 Viruses Viruses 1352 0   NTclustered gi|1843793423|gb|MN399742.1| 12188 g2254 i0 89.493 24.0552952202437 1066 108 99 4 1 1064 4225 5288 White clover mosaic virus isolate Kreis Stormarn_18 RNA replication protein, triple gene block protein 1, triple gene block protein 2, triple gene block protein 3, and coat protein genes, complete cds blastn 25667 1352 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus trifolii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;