RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA849822" and tax_kingdom = "Fusobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 2 ✖

bioproject 1

  • PRJNA849822 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5941900 5941900 PRJNA849822_P_NODE_37185_length_249_cov_0.886364_g37011_i0 PRJNA849822 37185 249 0.886364 2.20704636 uncultured Ilyobacter sp. 544433 Bacteria Bacteria 56.5 0.002   NTclustered gi|2621717559|emb|OY775911.1| 544433 g37011 i0 94.595 0.44578313253012 37 0 15 2 55 91 864077 864043 MAG: uncultured Ilyobacter sp. isolate 988a6a11-b556-497a-8909-2adea115d691 genome assembly, chromosome: 1 blastn 111 56.5 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Ilyobacter uncultured Ilyobacter sp.
9766595 9766595 PRJNA849822_P_NODE_17448_length_347_cov_1.675182_g17274_i0 PRJNA849822 17448 347 1.675182 5.81288154 Fusobacterium polymorphum 76857 Bacteria Bacteria 56.5 0.003   NTclustered gi|2706067283|gb|CP077110.1| 76857 g17274 i0 100 0.0864553314121038 30 0 9 0 105 134 2236498 2236527 Fusobacterium polymorphum strain KCOM1278 chromosome, complete genome blastn 30 56.5 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;