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contig_metadata

16 rows where analysis = "blastn", bioproject = "PRJNA849822" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 16 ✖

bioproject 1

  • PRJNA849822 · 16 ✖

analysis 1

  • blastn · 16 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3389419 3389419 PRJNA849822_P_NODE_39883_length_246_cov_0.901734_g39709_i0 PRJNA849822 39883 246 0.901734 2.21826564 Chlamydomonas reinhardtii 3055 Plants Plants 132 2.77e-26   NTclustered gi|2082260933|ref|XM_001696969.2| 3055 g39709 i0 77.674 0.873983739837398 215 48 87 0 16 230 1538 1324 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_12g523850v5), mRNA blastn 215 132 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
3389539 3389539 PRJNA849822_P_NODE_9803_length_478_cov_4.629630_g9630_i0 PRJNA849822 9803 478 4.62963 22.1296314 Chlamydomonas reinhardtii 3055 Plants Plants 106 3.52e-18   NTclustered gi|2082260798|ref|XM_001697008.2| 3055 g9630 i0 92 1.16108786610879 75 6 16 0 282 356 957 1031 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_12g520500v5), mRNA blastn 555 106 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
5061517 5061517 PRJNA849822_P_NODE_18404_length_337_cov_1.587121_g18230_i0 PRJNA849822 18404 337 1.587121 5.34859777 Eukaryota 2759 Plants Plants 60.2 1.9e-4   NTclustered gi|2082250449|ref|XM_043064139.1| 3055 g18230 i0 97.222 2.24629080118694 36 0 10 1 204 238 4497 4532 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_07g328250v5), mRNA blastn 757 60.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
5941783 5941783 PRJNA849822_P_NODE_22225_length_307_cov_1.726496_g22051_i0 PRJNA849822 22225 307 1.726496 5.30034272 Chlamydomonas reinhardtii 3055 Plants Plants 174 5.86e-39   NTclustered gi|2082248650|ref|XM_043063418.1| 3055 g22051 i0 77.857 29.6449511400651 280 62 91 0 7 286 578 857 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_06g290950v5), mRNA blastn 9101 174 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
7216804 7216804 PRJNA849822_P_NODE_35046_length_251_cov_1.213483_g34872_i0 PRJNA849822 35046 251 1.213483 3.04584233 Polytomella sp. Pringsheim 198.80 37502 Plants Plants 95.3 3.73e-15   NTclustered gi|635557420|emb|FN984965.1| 37502 g34872 i0 84 8.18326693227092 100 14 39 2 29 127 1356 1454 Polytomella sp. Pringsheim 198.80 mRNA for S-Adenosyl homocysteine hydrolase (sah1 gene) blastn 2054 95.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Polytomella Polytomella sp. Pringsheim 198.80
7216870 7216870 PRJNA849822_P_NODE_4566_length_743_cov_1.950746_g4402_i0 PRJNA849822 4566 743 1.950746 14.49404278 Volvox carteri 3067 Plants Plants 656 0   NTclustered gi|302849657|ref|XM_002956312.1| 3068 g4402 i0 83.593 83.9865410497981 707 109 95 6 32 734 517 1220 Volvox carteri f. nagariensis beta tubulin (tubB2), mRNA blastn 62402 656 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
8491344 8491344 PRJNA849822_P_NODE_13007_length_407_cov_1.634731_g12833_i0 PRJNA849822 13007 407 1.634731 6.65335517 Cephaleuros karstenii 1985640 Plants Plants 54.7 0.011   NTclustered gi|2192923902|ref|NC_060534.1| 1985640 g12833 i0 100 0.0712530712530713 29 0 7 0 372 400 280455 280483 Cephaleuros karstenii strain GD1942 chloroplast, complete genome blastn 29 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Trentepohliales Trentepohliaceae Cephaleuros Cephaleuros karstenii
10162065 10162065 PRJNA849822_P_NODE_6728_length_595_cov_3.045977_g6559_i0 PRJNA849822 6728 595 3.045977 18.12356315 Eukaryota 2759 Plants Plants 324 1.13e-83   NTclustered gi|552825417|ref|XM_005846759.1| 554065 g6559 i0 81.818 33.9663865546218 385 70 65 0 132 516 13 397 Chlorella variabilis 40S ribosomal protein S14 (CHLNCDRAFT_135401) mRNA, complete cds blastn 20210 327 0.990825688073395 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
14866594 14866594 PRJNA849822_P_NODE_24352_length_293_cov_2.127273_g24178_i0 PRJNA849822 24352 293 2.127273 6.23290989 Trebouxia sp. ex Placidium sp. PJ-2019a 2571973 Plants Plants 542 1.32e-149   NTclustered gi|1691252205|emb|LR586036.1| 2571973 g24178 i0 100 99.7713310580205 293 0 100 0 1 293 457 165 Trebouxia sp. ex Placidium sp. PJ-2019a partial 26S rRNA gene, isolate Trebouxia sp. pj16 ex Placidium sp. PJ-2019a blastn 29233 542 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. ex Placidium sp. PJ-2019a
17416810 17416810 PRJNA849822_P_NODE_24634_length_292_cov_1.296804_g24460_i0 PRJNA849822 24634 292 1.296804 3.78666768 Pseudochlorella signiensis 173497 Plants Plants 540 4.74e-149   NTclustered gi|725650714|ref|NC_025529.1| 173497 g24460 i0 100 120.794520547945 292 0 100 0 1 292 151604 151313 Pabia signiensis culture-collection SAG:7.90 chloroplast, complete genome blastn 35272 540 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Pseudochlorella Pseudochlorella signiensis
18689986 18689986 PRJNA849822_P_NODE_33975_length_252_cov_3.256983_g33801_i0 PRJNA849822 33975 252 3.256983 8.20759716 Volvox carteri 3067 Plants Plants 52.8 0.023   NTclustered gi|302837607|ref|XM_002950317.1| 3068 g33801 i0 100 0.111111111111111 28 0 11 0 25 52 940 967 Volvox carteri f. nagariensis uncharacterized protein (VOLCADRAFT_90672), partial mRNA blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
19965116 19965116 PRJNA849822_P_NODE_35316_length_251_cov_0.876404_g35142_i0 PRJNA849822 35316 251 0.876404 2.19977404 Diplosphaera sp. (in: green algae) 2911680 Plants Plants 267 7.459999999999999e-67   NTclustered gi|2644500050|gb|PP079688.1| 2911680 g35142 i0 99.32 69.1274900398406 147 1 59 0 105 251 1973 1827 Diplosphaera sp. (in: green algae) isolate C3 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 17351 267 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Diplosphaera Diplosphaera sp. (in: green algae)
20359912 20359912 PRJNA849822_P_NODE_35076_length_251_cov_0.943820_g34902_i0 PRJNA849822 35076 251 0.94382 2.3689882 Eukaryota 2759 Plants Plants 147 1.01e-30   NTclustered gi|2082248989|ref|XM_001691400.2| 3055 g34902 i0 79.279 56.9442231075697 222 36 86 8 28 244 956 740 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_06g298650v5), mRNA blastn 14293 148 0.993243243243243 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
22515310 22515310 PRJNA849822_P_NODE_18578_length_336_cov_0.874525_g18404_i0 PRJNA849822 18578 336 0.874525 2.938404 Volvox carteri 3067 Plants Plants 54.7 0.009   NTclustered gi|302829772|ref|XM_002946407.1| 3068 g18404 i0 100 0.169642857142857 29 0 9 0 204 232 595 567 Volvox carteri f. nagariensis RegA-like protein RlsL (rlsL), partial mRNA blastn 57 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
22515396 22515396 PRJNA849822_P_NODE_29998_length_267_cov_1.206186_g29824_i0 PRJNA849822 29998 267 1.206186 3.22051662 Helicosporidium sp. ex Simulium jonesi 145475 Plants Plants 206 1.77e-48   NTclustered gi|54399515|gb|AY729488.1| 145475 g29824 i0 87.931 9.25468164794007 174 21 65 0 1 174 403 576 Helicosporidium sp. ex Simulium jonesii EF-1 alpha-like protein (efl) mRNA, complete cds blastn 2471 206 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Helicosporidium Helicosporidium sp. ex Simulium jonesi
22911131 22911131 PRJNA849822_P_NODE_31458_length_260_cov_6.668449_g31284_i0 PRJNA849822 31458 260 6.668449 17.3379674 Eukaryota 2759 Plants Plants 481 2.55e-131   NTclustered gi|1201359270|gb|MF040792.1| 3078 g31284 i0 100 100 260 0 100 0 1 260 339 80 Auxenochlorella pyrenoidosa isolate HIT9 18S ribosomal RNA gene, partial sequence blastn 26000 481 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;