RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA849822" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 2 ✖

bioproject 1

  • PRJNA849822 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3389295 3389295 PRJNA849822_P_NODE_24343_length_293_cov_2.836364_g24169_i0 PRJNA849822 24343 293 2.836364 8.31054652 Dicrateria rotunda 2703868 Haptophyta other_Eukaryota 134 9.43e-27   NTclustered gi|259419547|emb|FN392562.1| 2703868 g24169 i0 84.058 9.84641638225256 138 22 47 0 1 138 40 177 Imantonia rotunda partial mRNA for calmodulin, contig 03038 blastn 2885 134 1 Eukaryota Haptista   Haptophyta   Isochrysidales Isochrysidaceae Dicrateria Dicrateria rotunda
6337546 6337546 PRJNA849822_P_NODE_38505_length_247_cov_0.896552_g38331_i0 PRJNA849822 38505 247 0.896552 2.21448344 Emiliania 2902 Haptophyta other_Eukaryota 82.4 2.85e-11   NTclustered gi|926485494|gb|KP892587.1| 2903 g38331 i0 79.31 1.40890688259109 116 24 47 0 126 241 3278 3163 Emiliania huxleyi isolate EH2 adaptor protein complex 1 or 2 subunit beta (AP12B) gene, partial cds blastn 348 82.4 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;