RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA849646" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA849646 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2113518 2113518 PRJNA849646_P_NODE_1762_length_400_cov_2.351682_g1644_i0 PRJNA849646 1762 400 2.351682 9.406728 Brachionus manjavacas 667381 Rotifera other_Eukaryota 150 1.3199999999999999e-31   NTclustered gi|307640106|gb|GQ894768.1| 667381 g1644 i0 76.552 2.895 290 58 71 10 44 328 169 453 Brachionus manjavacas isolate Bsal11 ATPase F0 subunit 6 (atp6) gene, partial cds; tRNA-Asp gene, complete sequence; and large ribosomal RNA subunit (rrnL) gene, partial sequence; mitochondrial blastn 1158 150 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus manjavacas
2113866 2113866 PRJNA849646_P_NODE_742_length_569_cov_2.520161_g626_i0 PRJNA849646 742 569 2.520161 14.33971609 Brachionus rubens 392764 Rotifera other_Eukaryota 451 4.74e-122   NTclustered gi|632795126|gb|KJ489417.1| 392764 g626 i0 81.152 38.9279437609842 573 99 100 9 1 569 590 23 Brachionus rubens chromosome I mitochondrion, complete sequence blastn 22150 451 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;