RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA849646" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA849646 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4666619 4666619 PRJNA849646_P_NODE_22044_length_264_cov_2.471204_g21926_i0 PRJNA849646 22044 264 2.471204 6.52397856 Anaeromyxobacter sp. Fw109-5 404589 Bacteria Bacteria 148 2.9899999999999995e-31   NTclustered gi|470482295|ref|NR_076524.1| 404589 g21926 i0 78.03 90.969696969697 264 39 97 14 3 259 1489 1740 Anaeromyxobacter sp. Fw109-5 strain Fw109-5 23S ribosomal RNA, complete sequence blastn 24016 148 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter sp. Fw109-5
13592136 13592136 PRJNA849646_P_NODE_8271_length_292_cov_1.789954_g8153_i0 PRJNA849646 8271 292 1.789954 5.22666568 Labilithrix luteola 1391654 Bacteria Bacteria 285 2.45e-72   NTclustered gi|913610804|gb|CP012333.1| 1391654 g8153 i0 84.314 5.24657534246575 306 32 100 9 1 292 11029323 11029020 Labilithrix luteola strain DSM 27648, complete genome blastn 1532 285 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
14866455 14866455 PRJNA849646_P_NODE_7272_length_296_cov_4.520179_g7154_i0 PRJNA849646 7272 296 4.520179 13.37972984 Myxococcus xanthus 34 Bacteria Bacteria 446 1.0799999999999999e-120   NTclustered gi|13959815|gb|AY033407.1| 34 g7154 i0 93.06 85.5641891891892 317 1 100 4 1 296 1336 1652 Myxococcus xanthus USC7-1p and USC7-2p genes, complete cds blastn 25327 446 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus xanthus
17416575 17416575 PRJNA849646_P_NODE_38474_length_241_cov_0.916667_g38356_i0 PRJNA849646 38474 241 0.916667 2.20916747 Cystobacter fuscus 43 Bacteria Bacteria 128 3.4999999999999997e-25   NTclustered gi|2579665545|gb|CP043492.1| 43 g38356 i0 81.132 4.28215767634855 159 30 66 0 1 159 1861127 1861285 Cystobacter fuscus strain Cbf 8 chromosome, complete genome blastn 1032 128 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Cystobacter Cystobacter fuscus
17416597 17416597 PRJNA849646_P_NODE_40294_length_234_cov_2.645963_g40176_i0 PRJNA849646 40294 234 2.645963 6.19155342 Anaeromyxobacter oryzae 2918170 Bacteria Bacteria 95.3 3.43e-15   NTclustered gi|2199265233|dbj|AP025591.1| 2918170 g40176 i0 82.301 2.21367521367521 113 16 47 4 101 211 4965376 4965486 Anaeromyxobacter oryzae DNA, complete genome blastn 518 95.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter oryzae
21240091 21240091 PRJNA849646_P_NODE_11857_length_284_cov_1.459716_g11739_i0 PRJNA849646 11857 284 1.459716 4.14559344 Polyangium aurulentum 2567896 Bacteria Bacteria 351 2.31e-92   NTclustered gi|2235996827|gb|CP079217.1| 2567896 g11739 i0 89.362 0.992957746478873 282 27 99 3 1 281 7818658 7818937 Polyangium aurulentum strain SDU3-1 chromosome, complete genome blastn 282 351 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Polyangium Polyangium aurulentum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;