RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA849646" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA849646 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2113674 2113674 PRJNA849646_P_NODE_30442_length_250_cov_0.870056_g30324_i0 PRJNA849646 30442 250 0.870056 2.17514 Mizuhopecten yessoensis 6573 Mollusca Mollusca 446 8.89e-121   NTclustered gi|1207943849|ref|XM_021506021.1| 6573 g30324 i0 98.8 1 250 3 100 0 1 250 6669 6420 PREDICTED: Mizuhopecten yessoensis forkhead box protein K2-like (LOC110455711), mRNA blastn 250 446 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Mizuhopecten Mizuhopecten yessoensis
3785332 3785332 PRJNA849646_P_NODE_39383_length_238_cov_2.539394_g39265_i0 PRJNA849646 39383 238 2.539394 6.04375772 Argopecten 31198 Mollusca Mollusca 440 3.899999999999999e-119   NTclustered gi|1069563869|gb|KU589290.1| 31199 g39265 i0 100 15.9789915966387 238 0 100 0 1 238 1408 1171 Argopecten irradians strain Zhongkehong mitochondrion, complete genome blastn 3803 440 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Argopecten Argopecten irradians
12317500 12317500 PRJNA849646_P_NODE_36730_length_243_cov_0.905882_g36612_i0 PRJNA849646 36730 243 0.905882 2.20129326 Bradybaena similaris 145626 Mollusca Mollusca 54.7 0.006   NTclustered gi|2912986657|dbj|AP039591.1| 145626 g36612 i0 100 0.119341563786008 29 0 12 0 186 214 25374975 25375003 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 10, sequence blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
18689678 18689678 PRJNA849646_P_NODE_40035_length_235_cov_2.716049_g39917_i0 PRJNA849646 40035 235 2.716049 6.38271515 Argopecten irradians 31199 Mollusca Mollusca 435 1.79e-117   NTclustered gi|2835396395|ref|XM_069273337.1| 31199 g39917 i0 100 1 235 0 100 0 1 235 1516 1282 PREDICTED: Argopecten irradians uncharacterized protein (LOC138327322), transcript variant X3, mRNA blastn 235 435 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Argopecten Argopecten irradians
25064331 25064331 PRJNA849646_P_NODE_23600_length_261_cov_2.941489_g23482_i0 PRJNA849646 23600 261 2.941489 7.67728629 Mizuhopecten yessoensis 6573 Mollusca Mollusca 472 1.54e-128   NTclustered gi|486183919|gb|JX972216.1| 6573 g23482 i0 99.234 20.9770114942529 261 2 100 0 1 261 281 541 Mizuhopecten yessoensis ferritin 1 mRNA, complete cds blastn 5475 472 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Mizuhopecten Mizuhopecten yessoensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;