RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA849646" and tax_phylum = "Microsporidia"

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tax_superkingdom 1

tax_phylum 1

  • Microsporidia · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA849646 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8490883 8490883 PRJNA849646_P_NODE_13127_length_281_cov_3.221154_g13009_i0 PRJNA849646 13127 281 3.221154 9.05144274 Ecytonucleospora hepatopenaei 646526 Fungi Fungi 209 1.45e-49   NTclustered gi|2522768008|gb|OR162445.1| 646526 g13009 i0 84.234 2.64768683274021 222 27 96 8 61 279 2533 2749 Enterocytozoon hepatopenaei strain SHFX2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 744 209 1 Eukaryota Opisthokonta Fungi Microsporidia     Enterocytozoonidae Ecytonucleospora Ecytonucleospora hepatopenaei
16535874 16535874 PRJNA849646_P_NODE_22113_length_264_cov_2.183246_g21995_i0 PRJNA849646 22113 264 2.183246 5.76376944 Endoreticulatus 42400 Fungi Fungi 211 3.76e-50   NTclustered gi|63095239|gb|AY960112.1| 262393 g21995 i0 83.333 6.41666666666667 228 38 86 0 37 264 965 1192 Endoreticulatus sp. CHW-2004 Taiwan alpha-tubulin gene, partial cds blastn 1694 211 1 Eukaryota Opisthokonta Fungi Microsporidia       Endoreticulatus Endoreticulatus sp. CHW-2004 Taiwan
25064411 25064411 PRJNA849646_P_NODE_2960_length_333_cov_1.873077_g2842_i0 PRJNA849646 2960 333 1.873077 6.23734641 Ecytonucleospora hepatopenaei 646526 Fungi Fungi 196 1.37e-45   NTclustered gi|2522768008|gb|OR162445.1| 646526 g2842 i0 95.2 0.684684684684685 125 5 68 1 1 124 3330 3206 Enterocytozoon hepatopenaei strain SHFX2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 228 196 1 Eukaryota Opisthokonta Fungi Microsporidia     Enterocytozoonidae Ecytonucleospora Ecytonucleospora hepatopenaei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;