RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA849646" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA849646 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17416475 17416475 PRJNA849646_P_NODE_28994_length_251_cov_2.073034_g28876_i0 PRJNA849646 28994 251 2.073034 5.20331534 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 163 1.01e-35   NTclustered gi|2874253789|emb|OY969773.1| 412054 g28876 i0 78.571 1.00398406374502 252 50 99 4 1 250 1459317 1459566 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 252 163 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
17416493 17416493 PRJNA849646_P_NODE_30534_length_250_cov_0.870056_g30416_i0 PRJNA849646 30534 250 0.870056 2.17514 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 351 1.99e-92   NTclustered gi|575456455|gb|CP007128.1| 861299 g30416 i0 92 98.988 250 20 100 0 1 250 4458507 4458258 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 24747 351 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
19964507 19964507 PRJNA849646_P_NODE_14196_length_279_cov_2.781553_g14078_i0 PRJNA849646 14196 279 2.781553 7.76053287 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 339 1.7599999999999998e-88   NTclustered gi|575456455|gb|CP007128.1| 861299 g14078 i0 89.051 11.2329749103943 274 28 98 2 1 273 3488306 3488578 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 3134 339 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
21240171 21240171 PRJNA849646_P_NODE_18817_length_270_cov_3.406091_g18699_i0 PRJNA849646 18817 270 3.406091 9.1964457 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 311 3.7e-80   NTclustered gi|575462059|gb|CP007130.1| 861299 g18699 i0 87.546 29.2555555555556 273 29 100 5 1 270 782769 783039 Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence blastn 7899 311 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;