RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA849646" and tax_phylum = "Deferribacterota"

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tax_superkingdom 1

tax_phylum 1

  • Deferribacterota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA849646 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9766158 9766158 PRJNA849646_P_NODE_16988_length_274_cov_1.935323_g16870_i0 PRJNA849646 16988 274 1.935323 5.30278502 Calditerrivibrio nitroreducens 477976 Bacteria Bacteria 268 2.2999999999999994e-67   NTclustered gi|312938725|gb|CP002347.1| 768670 g16870 i0 85.714 0.996350364963504 273 18 92 5 2 253 338455 338727 Calditerrivibrio nitroreducens DSM 19672, complete genome blastn 273 268 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Calditerrivibrionaceae Calditerrivibrio Calditerrivibrio nitroreducens
9766429 9766429 PRJNA849646_P_NODE_41248_length_230_cov_2.560510_g41130_i0 PRJNA849646 41248 230 2.56051 5.889173 Calditerrivibrio nitroreducens 477976 Bacteria Bacteria 87.9 5.63e-13   NTclustered gi|312938725|gb|CP002347.1| 768670 g41130 i0 82.407 24.2695652173913 108 11 80 7 2 105 1654176 1654073 Calditerrivibrio nitroreducens DSM 19672, complete genome blastn 5582 87.9 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Calditerrivibrionaceae Calditerrivibrio Calditerrivibrio nitroreducens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;