RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA849646" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA849646 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5941537 5941537 PRJNA849646_P_NODE_36445_length_243_cov_1.811765_g36327_i0 PRJNA849646 36445 243 1.811765 4.40258895 Eimeria maxima 5804 SAR_Eukaryotes SAR_Eukaryotes 80.5 1e-10   NTclustered gi|915141676|ref|XM_013482159.1| 5804 g36327 i0 84.81 30.5308641975309 79 12 33 0 1 79 4782 4860 Eimeria maxima hypothetical protein, conserved partial mRNA blastn 7419 80.5 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria maxima
13986980 13986980 PRJNA849646_P_NODE_12171_length_283_cov_2.657143_g12053_i0 PRJNA849646 12171 283 2.657143 7.51971469 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 518 2.14e-142   NTclustered gi|14495562|gb|L21708.2|PFA34K 5821 g12053 i0 99.647 99.9964664310954 283 1 100 0 1 283 940 1222 Plasmodium berghei p23-like protein mRNA, partial cds blastn 28299 523 0.990439770554493 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium berghei
23790672 23790672 PRJNA849646_P_NODE_5659_length_310_cov_2.877637_g5541_i0 PRJNA849646 5659 310 2.877637 8.9206747 Gregarina niphandrodes 110365 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.029   NTclustered gi|749159684|ref|XM_011133169.1| 110365 g5541 i0 100 0.0903225806451613 28 0 9 0 117 144 439 466 Gregarina niphandrodes hypothetical protein partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eugregarinorida Gregarinidae Gregarina Gregarina niphandrodes

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;