RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA849646" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA849646 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5941465 5941465 PRJNA849646_P_NODE_29085_length_251_cov_1.730337_g28967_i0 PRJNA849646 29085 251 1.730337 4.34314587 Bryobacterales bacterium F-183 2802972 Bacteria Bacteria 231 2.7199999999999997e-56   NTclustered gi|2131941663|dbj|AP025252.1| 2802972 g28967 i0 84.783 1.58964143426295 230 35 92 0 17 246 588703 588932 Bryobacterales bacterium F-183 DNA, nearly complete genome blastn 399 231 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales     Bryobacterales bacterium F-183
12317431 12317431 PRJNA849646_P_NODE_31930_length_248_cov_1.748571_g31812_i0 PRJNA849646 31930 248 1.748571 4.33645608 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 231 2.68e-56   NTclustered gi|2874253885|emb|OY970060.1| 171953 g31812 i0 84.783 1.74596774193548 230 35 93 0 18 247 4809735 4809964 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.4 genome assembly, chromosome: 1 blastn 433 231 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
13592085 13592085 PRJNA849646_P_NODE_42571_length_219_cov_4.520548_g42453_i0 PRJNA849646 42571 219 4.520548 9.90000012 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 351 1.7099999999999995e-92   NTclustered gi|2874254091|emb|OY970174.1| 171953 g42453 i0 95.853 182.493150684931 217 9 99 0 1 217 4358265 4358481 MAG: uncultured Acidobacteriota bacterium isolate MFD01275.bin.c.18 genome assembly, chromosome: 1 blastn 39966 351 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
16141159 16141159 PRJNA849646_P_NODE_4733_length_310_cov_3.451477_g4615_i0 PRJNA849646 4733 310 3.451477 10.6995787 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 62.1 4.81e-5   NTclustered gi|2874253700|emb|OY969426.1| 2651171 g4615 i0 88.679 1.40967741935484 53 2 16 4 206 256 284757 284807 MAG: Thermoanaerobaculia bacterium isolate MFD02979.bin.c.1 genome assembly, chromosome: 1 blastn 437 62.1 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
18689363 18689363 PRJNA849646_P_NODE_14315_length_279_cov_2.048544_g14197_i0 PRJNA849646 14315 279 2.048544 5.71543776 Chloracidobacterium validum 2821543 Bacteria Bacteria 250 8.49e-62   NTclustered gi|2033661925|gb|CP072649.1| 2821543 g14197 i0 83.395 11.8243727598566 271 43 97 2 1 270 662450 662181 Chloracidobacterium validum strain BV2-C chromosome 2, complete sequence blastn 3299 250 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Chloracidobacterium Chloracidobacterium validum
23790285 23790285 PRJNA849646_P_NODE_10159_length_287_cov_2.640187_g10041_i0 PRJNA849646 10159 287 2.640187 7.57733669 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 52.8 0.027   NTclustered gi|2814788339|emb|OY761475.2| 2910147 g10041 i0 94.118 0.355400696864112 34 2 12 0 204 237 4674293 4674260 MAG: Vicinamibacterales bacterium isolate 01def6b1-0c8c-435d-859a-076764f3ef92 genome assembly, chromosome: 1 blastn 102 52.8 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;