RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA849646" and tax_clade = "Stenosarchaea group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 4 ✖

bioproject 1

  • PRJNA849646 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10161684 10161684 PRJNA849646_P_NODE_10888_length_286_cov_1.446009_g10770_i0 PRJNA849646 10888 286 1.446009 4.13558574 Halomarina 871740 Archaea Archaea 250 8.73e-62   NTclustered gi|2270268912|gb|CP100448.1| 2961595 g10770 i0 83.212 31.1468531468531 274 44 95 2 1 273 439947 440219 Halomarina litorea strain BCD28 chromosome, complete genome blastn 8908 250 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Halomarina Halomarina litorea
12317390 12317390 PRJNA849646_P_NODE_28030_length_253_cov_1.711111_g27912_i0 PRJNA849646 28030 253 1.711111 4.32911083 Halocatena marina 2934937 Archaea Archaea 71.3 6.34e-8   NTclustered gi|2324023557|gb|CP109979.1| 2934937 g27912 i0 82.022 1.05533596837945 89 11 35 4 51 138 617862 617946 Halocatena marina strain QDMS1 chromosome, complete genome blastn 267 71.3 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Halocatena Halocatena marina
17416468 17416468 PRJNA849646_P_NODE_28414_length_252_cov_2.279330_g28296_i0 PRJNA849646 28414 252 2.27933 5.7439116 Halovalidus salilacus 3075124 Archaea Archaea 58.4 4.91e-4   NTclustered gi|2581323319|gb|CP134700.1| 3075124 g28296 i0 92.683 0.273809523809524 41 1 16 2 50 89 1689335 1689374 Halovalidus salilacus strain CCL63 chromosome, complete genome blastn 69 58.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Halovalidus Halovalidus salilacus
19084962 19084962 PRJNA849646_P_NODE_6515_length_309_cov_3.334746_g6397_i0 PRJNA849646 6515 309 3.334746 10.30436514 Halobacteriales 2235 Archaea Archaea 475 1.4399999999999997e-129   NTclustered gi|1678236646|gb|MN022518.1| 44099 g6397 i0 94.498 98.9935275080906 309 10 100 1 1 309 490 189 Halobacteriaceae gen. sp. strain DYA01 16S ribosomal RNA gene, partial sequence blastn 30589 475 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae   Halobacteriaceae gen. sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;