RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA849646" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA849646 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18689592 18689592 PRJNA849646_P_NODE_32415_length_248_cov_0.880000_g32297_i0 PRJNA849646 32415 248 0.88 2.1824 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 442 1.1399999999999995e-119   NTclustered gi|470505215|ref|XM_004348494.1| 1257118 g32297 i0 98.79 1 248 3 100 0 1 248 125 372 Acanthamoeba castellanii str. Neff epsilon subunit of coatomer protein complex isoform 1, putative (ACA1_158810), partial mRNA blastn 248 442 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
19964631 19964631 PRJNA849646_P_NODE_24976_length_259_cov_1.655914_g24858_i0 PRJNA849646 24976 259 1.655914 4.28881726 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 337 5.82e-88   NTclustered gi|470510335|ref|XM_004351460.1| 1257118 g24858 i0 96.552 0.783783783783784 203 7 78 0 39 241 424 222 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_149020), partial mRNA blastn 203 337 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
19964695 19964695 PRJNA849646_P_NODE_30276_length_250_cov_0.870056_g30158_i0 PRJNA849646 30276 250 0.870056 2.17514 Stemonaria longa 1258717 Evosea other_Eukaryota 215 2.73e-51   NTclustered gi|2616764619|gb|OR769388.1| 1258717 g30158 i0 99.16 27.816 119 1 48 0 1 119 4030 4148 Stemonaria longa voucher LE317506 small subunit ribosomal RNA gene, partial sequence blastn 6954 215 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Stemonitida Stemonitidae Stemonaria Stemonaria longa
22515071 22515071 PRJNA849646_P_NODE_34638_length_245_cov_1.790698_g34520_i0 PRJNA849646 34638 245 1.790698 4.3872101 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 344 3.26e-90   NTclustered gi|470454701|ref|XM_004340818.1| 1257118 g34520 i0 98.462 0.795918367346939 195 3 80 0 1 195 195 1 Acanthamoeba castellanii str. Neff ribosomal protein S12, putative (ACA1_151230), partial mRNA blastn 195 344 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;