RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA849172" and tax_phylum = "Thermomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Thermomicrobiota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA849172 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6337153 6337153 PRJNA849172_P_NODE_9845_length_685_cov_35.710784_g9496_i0 PRJNA849172 9845 685 35.710784 244.6188704 Sphaerobacter 2056 Bacteria Bacteria 580 7.049999999999998e-161   NTclustered gi|470485500|ref|NR_076704.1| 2057 g9496 i0 82.378 335.805839416058 698 94 100 27 1 685 1143 1824 Sphaerobacter thermophilus strain S 6022 23S ribosomal RNA gene, complete sequence blastn 230027 580 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia Sphaerobacterales Sphaerobacteraceae Sphaerobacter Sphaerobacter thermophilus
7214756 7214756 PRJNA849172_P_NODE_53106_length_290_cov_2.626728_g52746_i0 PRJNA849172 53106 290 2.626728 7.6175112 Sphaerobacter thermophilus 2057 Bacteria Bacteria 174 5.49e-39   NTclustered gi|269787736|gb|CP001824.1| 479434 g52746 i0 79.92 0.858620689655172 249 40 84 8 32 275 930969 930726 Sphaerobacter thermophilus DSM 20745 chromosome 2, complete sequence blastn 249 174 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia Sphaerobacterales Sphaerobacteraceae Sphaerobacter Sphaerobacter thermophilus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;