RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA849172" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA849172 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2110780 2110780 PRJNA849172_P_NODE_144682_length_202_cov_6.015504_g144322_i0 PRJNA849172 144682 202 6.015504 12.15131808 Metamycoplasma faucium 56142 Bacteria Bacteria 357 3.3299999999999996e-94   NTclustered gi|2708452869|gb|CP088155.1| 56142 g144322 i0 98.515 23.2079207920792 202 3 100 0 1 202 45302 45101 Metamycoplasma faucium strain UMCG-MFM1 chromosome, complete genome blastn 4688 357 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma faucium
12313813 12313813 PRJNA849172_P_NODE_121210_length_231_cov_2.632911_g120850_i0 PRJNA849172 121210 231 2.632911 6.08202441 Metamycoplasma faucium 56142 Bacteria Bacteria 405 1.38e-108   NTclustered gi|2708452869|gb|CP088155.1| 56142 g120850 i0 98.268 2.83982683982684 231 4 100 0 1 231 468398 468168 Metamycoplasma faucium strain UMCG-MFM1 chromosome, complete genome blastn 656 405 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma faucium
13587862 13587862 PRJNA849172_P_NODE_104951_length_243_cov_12.135294_g104591_i0 PRJNA849172 104951 243 12.135294 29.48876442 Spiroplasma endosymbiont of Antitype chi 3066308 Bacteria Bacteria 56.5 0.002   NTclustered gi|2706542423|emb|OZ026467.1| 3066308 g104591 i0 94.595 0.152263374485597 37 1 15 1 1 36 1540331 1540295 Spiroplasma endosymbiont of Antitype chi isolate 54779 genome assembly, chromosome: 1 blastn 37 56.5 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma endosymbiont of Antitype chi
16139951 16139951 PRJNA849172_P_NODE_71893_length_267_cov_6.515464_g71533_i0 PRJNA849172 71893 267 6.515464 17.39628888 Spiroplasma floricola 216937 Bacteria Bacteria 56.5 0.002   NTclustered gi|1297062390|gb|CP025057.1| 1336749 g71533 i0 100 0.112359550561798 30 0 11 0 237 266 933712 933683 Spiroplasma floricola 23-6 chromosome, complete genome blastn 30 56.5 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma floricola
21236846 21236846 PRJNA849172_P_NODE_124937_length_228_cov_2.761290_g124577_i0 PRJNA849172 124937 228 2.76129 6.2957412 Metamycoplasma faucium 56142 Bacteria Bacteria 311 3.0400000000000003e-80   NTclustered gi|2708452869|gb|CP088155.1| 56142 g124577 i0 91.228 2 228 20 100 0 1 228 54400 54173 Metamycoplasma faucium strain UMCG-MFM1 chromosome, complete genome blastn 456 311 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma faucium
23789007 23789007 PRJNA849172_P_NODE_56079_length_286_cov_2.159624_g55719_i0 PRJNA849172 56079 286 2.159624 6.17652464 Metamycoplasma faucium 56142 Bacteria Bacteria 479 1.02e-130   NTclustered gi|2708452869|gb|CP088155.1| 56142 g55719 i0 96.853 2 286 9 100 0 1 286 77274 77559 Metamycoplasma faucium strain UMCG-MFM1 chromosome, complete genome blastn 572 479 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma faucium
23789891 23789891 PRJNA849172_P_NODE_85899_length_254_cov_4.453039_g85539_i0 PRJNA849172 85899 254 4.453039 11.31071906 Metamycoplasma faucium 56142 Bacteria Bacteria 436 5.45e-118   NTclustered gi|2921905358|gb|CP182786.1| 56142 g85539 i0 97.638 3.11417322834646 254 6 100 0 1 254 136194 136447 Metamycoplasma faucium strain DC-333 chromosome, complete genome blastn 791 436 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma faucium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;