RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA849172" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA849172 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2109997 2109997 PRJNA849172_P_NODE_116702_length_234_cov_11.944099_g116342_i0 PRJNA849172 116702 234 11.944099 27.94919166 Acytostelium subglobosum 361139 Evosea other_Eukaryota 93.5 1.23e-14   NTclustered gi|831789374|ref|XM_012903584.1| 1410327 g116342 i0 90.141 28.5512820512821 71 7 30 0 87 157 653 583 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 6681 93.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
2508331 2508331 PRJNA849172_P_NODE_65162_length_275_cov_1.544554_g64802_i0 PRJNA849172 65162 275 1.544554 4.2475235 root 1 Root_unresolved Root_unresolved 60.2 1.51e-4   NTclustered gi|330845851|ref|XM_003294733.1| 5786 g64802 i0 89.796 33.8 49 1 17 4 80 126 307 353 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_159839), partial mRNA blastn 9295 60.2 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
19962317 19962317 PRJNA849172_P_NODE_28036_length_387_cov_8.232484_g27677_i0 PRJNA849172 28036 387 8.232484 31.85971308 Entamoeba histolytica 5759 Evosea other_Eukaryota 248 4.39e-61   NTclustered gi|467633|emb|Z29969.1| 5759 g27677 i0 78.827 4.9328165374677 392 66 100 15 1 387 644 1023 E.histolytica plasmid genes for ribosomal RNA and hemolysins HLY1, HLY5mc1 HLY5mc2 HLY4 blastn 1909 248 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
21237965 21237965 PRJNA849172_P_NODE_29497_length_377_cov_14.141447_g29138_i0 PRJNA849172 29497 377 14.141447 53.31325519 Entamoeba histolytica 5759 Evosea other_Eukaryota 399 1.1099999999999998e-106   NTclustered gi|467633|emb|Z29969.1| 5759 g29138 i0 85.979 48.0238726790451 378 47 99 6 1 376 2017 1644 E.histolytica plasmid genes for ribosomal RNA and hemolysins HLY1, HLY5mc1 HLY5mc2 HLY4 blastn 18105 399 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;