RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA849172" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA849172 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12313471 12313471 PRJNA849172_P_NODE_109050_length_241_cov_11.761905_g108690_i0 PRJNA849172 109050 241 11.761905 28.34619105 Spizellomyces punctatus 109760 Fungi Fungi 126 1.26e-24   NTclustered gi|1027025241|ref|XM_016756493.1| 645134 g108690 i0 88.462 1.30705394190871 104 12 43 0 135 238 1092 989 Spizellomyces punctatus DAOM BR117 uncharacterized protein (SPPG_08336), mRNA blastn 315 126 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
18686943 18686943 PRJNA849172_P_NODE_21935_length_439_cov_14.543716_g21576_i0 PRJNA849172 21935 439 14.543716 63.84691324 Gromochytrium mamkaevae 1486924 Fungi Fungi 267 1.39e-66   NTclustered gi|612507318|gb|KF586842.1| 1486924 g21576 i0 88.393 62.4851936218679 224 22 73 4 219 439 5408 5630 Gromochytrium mamkaevae strain CALU x-51 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 27431 267 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Gromochytriales Gromochytriaceae Gromochytrium Gromochytrium mamkaevae
19084251 19084251 PRJNA849172_P_NODE_53635_length_289_cov_5.171296_g53275_i0 PRJNA849172 53635 289 5.171296 14.94504544 Rhizophlyctis 64515 Fungi Fungi 529 1.01e-145   NTclustered gi|82398309|gb|DQ273787.1| 64517 g53275 i0 99.654 97.1280276816609 289 1 100 0 1 289 347 59 Rhizophlyctis rosea isolate AFTOL-ID 43 28S ribosomal RNA gene, partial sequence blastn 28070 534 0.99063670411985 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophlyctidales Rhizophlyctidaceae Rhizophlyctis Rhizophlyctis rosea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;