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contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA849172" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 11 ✖

bioproject 1

  • PRJNA849172 · 11 ✖

analysis 1

  • blastn · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
834358 834358 PRJNA849172_P_NODE_111001_length_240_cov_2.520958_g110641_i0 PRJNA849172 111001 240 2.520958 6.0502992 Yamagishiella unicocca 51707 Plants Plants 52.8 0.022   NTclustered gi|1361864716|dbj|LC314413.1| 51707 g110641 i0 96.875 0.4 32 0 13 1 76 106 242883 242914 Yamagishiella unicocca DNA, mating locus, mating-type minus rearranged domain, strain: NIES-3983 blastn 96 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Yamagishiella Yamagishiella unicocca
2109780 2109780 PRJNA849172_P_NODE_109042_length_241_cov_14.208333_g108682_i0 PRJNA849172 109042 241 14.208333 34.24208253 Nannochloris normandinae 926285 Plants Plants 429 8.58e-116   NTclustered gi|922575245|gb|JQ921007.1| 926285 g108682 i0 98.755 109.643153526971 241 3 100 0 1 241 769 529 Nannochloris normandinae strain SAG 9.82 23S large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 26424 429 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Nannochloris Nannochloris normandinae
4662643 4662643 PRJNA849172_P_NODE_105004_length_243_cov_7.670588_g104644_i0 PRJNA849172 105004 243 7.670588 18.63952884 Pseudochlorella signiensis 173497 Plants Plants 335 1.9399999999999993e-87   NTclustered gi|725650714|ref|NC_025529.1| 173497 g104644 i0 94.47 107.670781893004 217 12 89 0 27 243 150053 150269 Pabia signiensis culture-collection SAG:7.90 chloroplast, complete genome blastn 26164 335 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Pseudochlorella Pseudochlorella signiensis
10160791 10160791 PRJNA849172_P_NODE_18428_length_482_cov_18.315403_g18069_i0 PRJNA849172 18428 482 18.315403 88.28024246 Chlorellales 35460 Plants Plants 143 2.71e-29   NTclustered gi|404276808|gb|JQ655149.1| 3077 g18069 i0 78.541 9.53319502074689 233 38 47 10 257 482 2128 1901 Chlorella vulgaris heat shock protein 90 mRNA, complete cds blastn 4595 143 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella vulgaris
10161560 10161560 PRJNA849172_P_NODE_86808_length_253_cov_20.494444_g86448_i0 PRJNA849172 86808 253 20.494444 51.85094332 Stichococcaceae 2910630 Plants Plants 457 4.16e-124   NTclustered gi|1518373087|gb|MK201750.1| 29647 g86448 i0 99.209 99.798418972332 253 2 100 0 1 253 792 1044 Stichococcus sp. strain KZ-5-1-1 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 25249 457 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus sp.
13590927 13590927 PRJNA849172_P_NODE_72791_length_266_cov_17.321244_g72431_i0 PRJNA849172 72791 266 17.321244 46.07450904 Jenufa perforata 993091 Plants Plants 62.1 4.04e-5   NTclustered gi|1829768140|ref|NC_046779.1| 993091 g72431 i0 92.857 0.665413533834586 42 3 16 0 5 46 616 575 Jenufa perforata culture CAUP:H8101 mitochondrion, complete genome blastn 177 62.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae     Jenufa Jenufa perforata
19962679 19962679 PRJNA849172_P_NODE_40596_length_324_cov_10.988048_g40236_i0 PRJNA849172 40596 324 10.988048 35.60127552 Chromochloris zofingiensis 31302 Plants Plants 405 2.03e-108   NTclustered gi|674840721|ref|NC_024758.1| 31302 g40236 i0 89.231 1.00308641975309 325 33 99 2 1 323 40409 40733 Chromochloris zofingiensis strain UTEX 56 mitochondrion, complete genome blastn 325 405 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Chromochloridaceae Chromochloris Chromochloris zofingiensis
21236717 21236717 PRJNA849172_P_NODE_120377_length_231_cov_6.000000_g120017_i0 PRJNA849172 120377 231 6 13.86 Prototheca lentecrescens 2836214 Plants Plants 84.2 7.32e-12   NTclustered gi|2038040444|gb|MZ198751.1| 2836214 g120017 i0 79.339 11.8831168831169 121 23 52 2 14 133 1129 1010 Prototheca lentecrescens strain PK1 small subunit ribosomal RNA gene, partial sequence blastn 2745 84.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca lentecrescens
22910598 22910598 PRJNA849172_P_NODE_80878_length_259_cov_1.672043_g80518_i0 PRJNA849172 80878 259 1.672043 4.33059137 Borodinellopsis 1148059 Plants Plants 147 1.0500000000000001e-30   NTclustered gi|1509777659|gb|MG778126.1| 1148060 g80518 i0 94.792 34.4478764478764 96 2 36 3 123 215 19408 19313 Borodinellopsis texensis heme attachment to plastid cytochrome c (ccsA), photosystem II reaction center Z protein (psbZ), M protein of photosystem II (psbM), ribosomal protein S14 (rps14), ribosomal protein S7 (rps7), and ATP synthase CF1 epsilon subunit (atpE) genes, complete cds; tRNA-Leu (trnL-UAA) gene, complete sequence; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (rbcL) gene, complete cds; tRNA-Asp (trnD-GUC) gene, complete sequence; CP47 chlorophyll apoprotein of photosystem II (psbB), hypothetical protein (psbB), photosystem II protein T (psbT), photosystem II protein N (psbN), and photosystem II protein H (psbH) genes, complete cds; tRNA-Glu (trnE-UUC) gene, complete sequence; and photosystem II protein V (psbE) and ribosomal protein S9 (rps9) genes, complete cds; chloroplast blastn 8922 147 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlorococcaceae Borodinellopsis Borodinellopsis texensis
25061926 25061926 PRJNA849172_P_NODE_2300_length_1453_cov_21.331884_g2134_i0 PRJNA849172 2300 1453 21.331884 309.95227452 Haematococcus lacustris 44745 Plants Plants 1297 0   NTclustered gi|1279575454|gb|MF683078.1| 44745 g2134 i0 83.391 245.563661390227 1445 195 98 39 3 1427 3556 2137 Haematococcus lacustris 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; chloroplast blastn 356804 1297 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
25062603 25062603 PRJNA849172_P_NODE_45760_length_308_cov_14.051064_g45400_i0 PRJNA849172 45760 308 14.051064 43.27727712 Chlamydomonas reinhardtii 3055 Plants Plants 219 2.68e-52   NTclustered gi|18243|emb|X60826.1| 3055 g45400 i0 85.577 18.5551948051948 208 30 68 0 101 308 399 192 C.reinhardtii UBI3 mRNA for ubiquitin-fusion protein (UbCEP52) blastn 5715 219 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;