RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA849172" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 5 ✖

bioproject 1

  • PRJNA849172 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7213337 7213337 PRJNA849172_P_NODE_140126_length_207_cov_6.477612_g139766_i0 PRJNA849172 140126 207 6.477612 13.40865684 Tetramitus jugosus 166959 Heterolobosea other_Eukaryota 370 4.4e-98   NTclustered gi|2233316042|emb|OW569396.1| 166959 g139766 i0 100 0.966183574879227 200 0 97 0 8 207 40591 40392 Tetramitus jugosus genome assembly, organelle: mitochondrion blastn 200 370 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Tetramitus Tetramitus jugosus
11037847 11037847 PRJNA849172_P_NODE_102989_length_244_cov_9.707602_g102629_i0 PRJNA849172 102989 244 9.707602 23.68654888 Keelungia nitschei 2529305 Euglenozoa other_Eukaryota 200 7.4299999999999985e-47   NTclustered gi|1581142783|gb|MK567808.1| 2529305 g102629 i0 81.893 101.577868852459 243 38 99 5 1 242 1606 1369 Keelungia nitschei strain HFCC166 large subunit ribosomal RNA gene, partial sequence blastn 24785 200 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Heteronematidae Keelungia Keelungia nitschei
11040235 11040235 PRJNA849172_P_NODE_49709_length_297_cov_3.026786_g49349_i0 PRJNA849172 49709 297 3.026786 8.98955442 Bodo saltans 75058 Euglenozoa other_Eukaryota 265 3.2599999999999997e-66   NTclustered gi|7012640|gb|AF177240.1|AF177240 75058 g49349 i0 85.714 2.2020202020202 252 34 85 2 39 289 282 532 Bodo saltans clone pBME59 mitocondrial minicircle DNA blastn 654 265 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
15260748 15260748 PRJNA849172_P_NODE_60292_length_280_cov_12.193237_g59932_i0 PRJNA849172 60292 280 12.193237 34.1410636 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 154 6.88e-33   NTclustered gi|462269765|gb|KC353358.1| 1295595 g59932 i0 89.431 46.7107142857143 123 12 44 1 7 128 66155 66277 Reclinomonas americana ATCC 50284 mitochondrion, complete genome blastn 13079 154 1 Eukaryota Discoba       Jakobida Histionidae Reclinomonas Reclinomonas americana
18686103 18686103 PRJNA849172_P_NODE_127475_length_225_cov_7.513158_g127115_i0 PRJNA849172 127475 225 7.513158 16.9046055 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 52.8 0.02   NTclustered gi|2119416215|ref|XM_044699845.1| 51637 g127115 i0 94.118 0.151111111111111 34 2 15 0 15 48 194 227 Naegleria lovaniensis uncharacterized protein (C9374_009636), partial mRNA blastn 34 52.8 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;