RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA846486" and tax_phylum = "Rotifera"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Rotifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA846486 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3383980 3383980 PRJNA846486_P_NODE_20043_length_285_cov_6.970339_g19947_i0 PRJNA846486 20043 285 6.970339 19.86546615 Epiphanes senta 338913 Rotifera other_Eukaryota 355 1.79e-93   NTclustered gi|72153754|gb|DQ089742.1| 338913 g19947 i0 91.829 51.3789473684211 257 18 89 3 30 284 2106 1851 Epiphanes senta 28S ribosomal RNA gene, partial sequence blastn 14643 355 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Epiphanidae Epiphanes Epiphanes senta
8486203 8486203 PRJNA846486_P_NODE_9687_length_396_cov_5.236311_g9592_i0 PRJNA846486 9687 396 5.236311 20.73579156 Brachionus rubens 392764 Rotifera other_Eukaryota 226 2.1099999999999998e-54   NTclustered gi|632795126|gb|KJ489417.1| 392764 g9592 i0 82.353 30.5126262626263 272 36 67 9 17 281 11197 10931 Brachionus rubens chromosome I mitochondrion, complete sequence blastn 12083 226 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens
17411400 17411400 PRJNA846486_P_NODE_18814_length_293_cov_4.102459_g18718_i0 PRJNA846486 18814 293 4.102459 12.02020487 Euchlanis dilatata 231620 Rotifera other_Eukaryota 241 5.400000000000001e-59   NTclustered gi|213959404|gb|FJ426638.1| 231620 g18718 i0 94.34 30.9590443686007 159 5 54 3 1 158 233 388 Euchlanis dilatata voucher S. H. Cheng 009 16S ribosomal RNA gene, partial sequence; mitochondrial blastn 9071 241 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Euchlanis Euchlanis dilatata

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;