RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA846486" and tax_phylum = "Planctomycetota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA846486 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7211476 7211476 PRJNA846486_P_NODE_81806_length_167_cov_0.881356_g81710_i0 PRJNA846486 81806 167 0.881356 1.47186452 Limnoglobus roseus 2598579 Bacteria Bacteria 54.7 0.004   NTclustered gi|1733446852|gb|CP042425.1| 2598579 g81710 i0 100 0.173652694610778 29 0 17 0 5 33 11497 11525 Limnoglobus roseus strain PX52 chromosome, complete genome blastn 29 54.7 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Limnoglobus Limnoglobus roseus
19959785 19959785 PRJNA846486_P_NODE_92296_length_162_cov_1.831858_g92200_i0 PRJNA846486 92296 162 1.831858 2.96760996 Singulisphaera sp. Ch08 3120278 Bacteria Bacteria 76.8 8e-10   NTclustered gi|2732846650|gb|CP155447.1| 3120278 g92200 i0 80.392 0.62962962962963 102 18 62 2 52 152 6103107 6103007 Singulisphaera sp. Ch08 chromosome, complete genome blastn 102 76.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae Singulisphaera Singulisphaera sp. Ch08

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;