RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA846486" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA846486 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13586890 13586890 PRJNA846486_P_NODE_44171_length_207_cov_2.215190_g44075_i0 PRJNA846486 44171 207 2.21519 4.5854433 Hyaloperonospora arabidopsidis 272952 SAR_Eukaryotes SAR_Eukaryotes 100 6.38e-17   NTclustered gi|2248512796|ref|NC_063789.1| 272952 g44075 i0 79.73 46.1449275362319 148 22 70 6 1 145 1013 1155 Hyaloperonospora arabidopsidis isolate Noks1 mitochondrion, complete genome blastn 9552 100 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora arabidopsidis
14861250 14861250 PRJNA846486_P_NODE_7632_length_442_cov_2.941476_g7538_i0 PRJNA846486 7632 442 2.941476 13.00132392 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 222 3.08e-53   NTclustered gi|673019759|ref|XM_008865619.1| 157072 g7538 i0 79.027 17.8144796380091 329 65 74 4 99 425 482 156 Aphanomyces invadans 40S ribosomal protein S23 mRNA blastn 7874 222 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
23785593 23785593 PRJNA846486_P_NODE_65159_length_179_cov_1.430769_g65063_i0 PRJNA846486 65159 179 1.430769 2.56107651 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 318 1.35e-82   NTclustered gi|1111669722|ref|NC_032051.1| 112090 g65063 i0 98.876 134.899441340782 178 2 99 0 1 178 2063 2240 Aphanomyces astaci isolate AP03 mitochondrion, complete genome blastn 24147 318 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;