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contig_metadata

27 rows where analysis = "blastn", bioproject = "PRJNA846486" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 27 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA846486 · 27 ✖

analysis 1

  • blastn · 27 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
833253 833253 PRJNA846486_P_NODE_30041_length_241_cov_1.552083_g29945_i0 PRJNA846486 30041 241 1.552083 3.74052003 Lampetra fluviatilis 7748 Chordata Chordata 110 1.27e-19   NTclustered gi|2815005712|emb|OZ078592.2| 7748 g29945 i0 100 62.5020746887967 59 0 26 0 183 241 7645035 7644977 Lampetra fluviatilis genome assembly, chromosome: 24 blastn 15063 110 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
1231443 1231443 PRJNA846486_P_NODE_79241_length_168_cov_0.873950_g79145_i0 PRJNA846486 79241 168 0.87395 1.468236 Artiodactyla 91561 Chordata Chordata 134 4.9000000000000005e-27   NTclustered gi|2102016074|ref|XM_043882542.1| 9860 g79145 i0 94.318 74.625 88 4 52 1 31 117 1010 1097 PREDICTED: Cervus elaphus RERG like (RERGL), mRNA blastn 12537 135 0.992592592592593 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Cervus Cervus elaphus
3383989 3383989 PRJNA846486_P_NODE_28703_length_246_cov_0.857868_g28607_i0 PRJNA846486 28703 246 0.857868 2.11035528 Myxine glutinosa 7769 Chordata Chordata 307 4.2900000000000005e-79   NTclustered gi|2797590800|ref|XR_010983375.1| 7769 g28607 i0 89.243 93.3861788617886 251 20 99 4 1 244 904 654 PREDICTED: Myxine glutinosa uncharacterized lncRNA (LOC137421632), ncRNA blastn 22973 307 1 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa
3384121 3384121 PRJNA846486_P_NODE_83643_length_166_cov_0.888889_g83547_i0 PRJNA846486 83643 166 0.888889 1.47555574 Bos taurus 9913 Chordata Chordata 154 3.699999999999999e-33   NTclustered gi|226510599|gb|AC149694.4| 9913 g83547 i0 89.916 111.144578313253 119 12 75 0 8 126 31950 31832 Bos taurus BAC CH240-423C21 (Children's Hospital Oakland Research Institute Bovine BAC Library complete sequence blastn 18450 154 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus
3384134 3384134 PRJNA846486_P_NODE_88363_length_164_cov_0.904348_g88267_i0 PRJNA846486 88363 164 0.904348 1.48313072 Orcinus orca 9733 Chordata Chordata 99 1.73e-16   NTclustered gi|2280715558|ref|XM_004262875.3| 9733 g88267 i0 91.667 34.4207317073171 72 4 43 2 17 87 5628 5558 PREDICTED: Orcinus orca aldehyde oxidase 1 (AOX1), transcript variant X1, mRNA blastn 5645 99 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Delphinidae Orcinus Orcinus orca
4661635 4661635 PRJNA846486_P_NODE_20224_length_284_cov_12.310638_g20128_i0 PRJNA846486 20224 284 12.310638 34.96221192 Physalaemus kroyeri 1672236 Chordata Chordata 398 2.9199999999999993e-106   NTclustered gi|2323444365|gb|OK634323.1| 1672236 g20128 i0 99.541 25.8274647887324 218 1 77 0 1 218 100 317 Physalaemus kroyeri voucher ZUEC 17480 5S ribosomal RNA and non-transcribed spacer intergenic spacer, partial sequence blastn 7335 398 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Physalaemus Physalaemus kroyeri
4661806 4661806 PRJNA846486_P_NODE_90904_length_163_cov_0.912281_g90808_i0 PRJNA846486 90904 163 0.912281 1.48701803 Phacochoerus africanus 41426 Chordata Chordata 104 3.7e-18   NTclustered gi|2225052693|ref|XR_007134830.1| 41426 g90808 i0 100 0.343558282208589 56 0 34 0 108 163 156 211 PREDICTED: Phacochoerus africanus uncharacterized LOC125126901 (LOC125126901), ncRNA blastn 56 104 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Phacochoerus Phacochoerus africanus
5059447 5059447 PRJNA846486_P_NODE_86824_length_165_cov_0.896552_g86728_i0 PRJNA846486 86824 165 0.896552 1.4793108 Bovidae 9895 Chordata Chordata 134 4.7900000000000005e-27   NTclustered gi|1068294018|gb|KX592814.1| 9913 g86728 i0 88.393 75.8121212121212 112 11 70 2 3 113 8208992 8208882 Bos taurus isolate Dominette_000065F genomic sequence blastn 12509 135 0.992592592592593 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus
6335458 6335458 PRJNA846486_P_NODE_28085_length_248_cov_1.306533_g27989_i0 PRJNA846486 28085 248 1.306533 3.24020184 Lampetra 13103 Chordata Chordata 435 1.91e-117   NTclustered gi|2805713195|emb|OZ078407.1| 7748 g27989 i0 98.387 275.004032258065 248 2 100 1 1 248 2179215 2178970 Lampetra fluviatilis genome assembly, chromosome: 4 blastn 68201 435 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
6335497 6335497 PRJNA846486_P_NODE_84345_length_166_cov_0.888889_g84249_i0 PRJNA846486 84345 166 0.888889 1.47555574 Artiodactyla 91561 Chordata Chordata 97.1 6.33e-16   NTclustered gi|2102042657|ref|XR_006338410.1| 9860 g84249 i0 96.552 35.6385542168675 58 2 35 0 109 166 24 81 PREDICTED: Cervus elaphus uncharacterized LOC122685490 (LOC122685490), ncRNA blastn 5916 97.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Cervus Cervus elaphus
7211338 7211338 PRJNA846486_P_NODE_18586_length_295_cov_1.691057_g18490_i0 PRJNA846486 18586 295 1.691057 4.98861815 Ornithorhynchus anatinus 9258 Chordata Chordata 54.7 0.008   NTclustered gi|2874235217|dbj|LC747015.1| 9258 g18490 i0 100 0.0983050847457627 29 0 10 0 1 29 4 32 Ornithorhynchus anatinus MEST mRNA, isoform 2, containing the transcription start site blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Monotremata Ornithorhynchidae Ornithorhynchus Ornithorhynchus anatinus
7211502 7211502 PRJNA846486_P_NODE_88666_length_164_cov_0.904348_g88570_i0 PRJNA846486 88666 164 0.904348 1.48313072 Gallus gallus 9031 Chordata Chordata 267 4.49e-67   NTclustered gi|84095265|gb|AC161465.3| 9031 g88570 i0 99.32 0.896341463414634 147 1 90 0 1 147 65095 64949 Gallus gallus BAC clone CH261-97D4 from chromosome ul, complete sequence blastn 147 267 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
11037018 11037018 PRJNA846486_P_NODE_79289_length_168_cov_0.873950_g79193_i0 PRJNA846486 79289 168 0.87395 1.468236 Hyla sarda 327740 Chordata Chordata 95.3 2.31e-15   NTclustered gi|2512194126|ref|XM_056574888.1| 327740 g79193 i0 98.182 64.1488095238095 55 0 33 1 1 55 4445 4498 PREDICTED: Hyla sarda SH3 domain containing ring finger 2 (SH3RF2), transcript variant X2, mRNA blastn 10777 95.3 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hylidae Hyla Hyla sarda
11037033 11037033 PRJNA846486_P_NODE_84229_length_166_cov_0.888889_g84133_i0 PRJNA846486 84229 166 0.888889 1.47555574 Moschus berezovskii 68408 Chordata Chordata 261 2.12e-65   NTclustered gi|2492359703|ref|XM_055396408.1| 68408 g84133 i0 94.706 803.620481927711 170 5 100 1 1 166 7380 7211 PREDICTED: Moschus berezovskii epidermal growth factor receptor pathway substrate 8 (EPS8), mRNA blastn 133401 261 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Moschidae Moschus Moschus berezovskii
12312503 12312503 PRJNA846486_P_NODE_78850_length_168_cov_0.873950_g78754_i0 PRJNA846486 78850 168 0.87395 1.468236 Myxine glutinosa 7769 Chordata Chordata 135 1.3600000000000002e-27   NTclustered gi|2797566006|ref|XM_068113460.1| 7769 g78754 i0 91.837 56.0476190476191 98 6 58 2 70 166 1311 1407 PREDICTED: Myxine glutinosa dicarbonyl and L-xylulose reductase (DCXR), mRNA blastn 9416 135 1 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa
12312552 12312552 PRJNA846486_P_NODE_93590_length_162_cov_0.920354_g93494_i0 PRJNA846486 93590 162 0.920354 1.49097348 Bos javanicus 9906 Chordata Chordata 169 1.28e-37   NTclustered gi|2633679491|ref|XR_009735280.1| 9906 g93494 i0 100 39.3518518518519 91 0 100 0 1 91 5736 5646 PREDICTED: Bos javanicus uncharacterized LOC133244060 (LOC133244060), transcript variant X2, ncRNA blastn 6375 169 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos javanicus
13587039 13587039 PRJNA846486_P_NODE_96471_length_153_cov_2.384615_g96375_i0 PRJNA846486 96471 153 2.384615 3.64846095 Sus scrofa 9823 Chordata Chordata 52.8 0.013   NTclustered gi|261876334|emb|FP101957.5| 9823 g96375 i0 100 0.183006535947712 28 0 18 0 54 81 97979 97952 Pig DNA sequence from clone CH242-144O20 on chromosome X, complete sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
13985226 13985226 PRJNA846486_P_NODE_48531_length_200_cov_1.562914_g48435_i0 PRJNA846486 48531 200 1.562914 3.125828 Chordata 7711 Chordata Chordata 62.1 2.89e-5   NTclustered gi|2017869439|ref|XM_040350707.1| 8407 g48435 i0 97.222 4.605 36 1 18 0 1 36 1217 1252 PREDICTED: Rana temporaria actin, alpha cardiac muscle 2 (LOC120937454), mRNA blastn 921 62.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Rana Rana temporaria
14861168 14861168 PRJNA846486_P_NODE_40592_length_214_cov_1.581818_g40496_i0 PRJNA846486 40592 214 1.581818 3.38509052 Pseudis fusca 428383 Chordata Chordata 76.8 1.12e-9   NTclustered gi|2323444369|gb|OK634327.1| 428383 g40496 i0 88.71 2.31775700934579 62 7 29 0 152 213 78 17 Pseudis fusca voucher ZUEC 13235 5S ribosomal RNA and non-transcribed spacer intergenic spacer, partial sequence blastn 496 76.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hylidae Pseudis Pseudis fusca
16136053 16136053 PRJNA846486_P_NODE_91313_length_163_cov_0.912281_g91217_i0 PRJNA846486 91313 163 0.912281 1.48701803 Sceloporus undulatus 8520 Chordata Chordata 78.7 2.24e-10   NTclustered gi|2069556207|ref|XM_042472289.1| 8520 g91217 i0 86.486 0.907975460122699 74 7 44 1 1 71 3236 3309 PREDICTED: Sceloporus undulatus neurogenic locus notch homolog protein 4-like (LOC121933065), transcript variant X2, mRNA blastn 148 78.7 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Phrynosomatidae Sceloporus Sceloporus undulatus
17411480 17411480 PRJNA846486_P_NODE_63014_length_181_cov_2.704545_g62918_i0 PRJNA846486 63014 181 2.704545 4.89522645 Mus musculus 10090 Chordata Chordata 263 6.519999999999999e-66   NTclustered gi|28394628|gb|AY188690.1| 10090 g62918 i0 99.31 76.8895027624309 145 1 80 0 37 181 345 489 Mus musculus clone 10D4 T-cell receptor beta chain mRNA, complete cds blastn 13917 263 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
19959748 19959748 PRJNA846486_P_NODE_79436_length_168_cov_0.873950_g79340_i0 PRJNA846486 79436 168 0.87395 1.468236 Rana temporaria 8407 Chordata Chordata 52.8 0.014   NTclustered gi|2017849794|ref|XM_040340493.1| 8407 g79340 i0 100 0.333333333333333 28 0 17 0 128 155 3554 3527 PREDICTED: Rana temporaria ATPase phospholipid transporting 8A2 (ATP8A2), transcript variant X1, mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Rana Rana temporaria
21235393 21235393 PRJNA846486_P_NODE_73637_length_171_cov_1.278689_g73541_i0 PRJNA846486 73637 171 1.278689 2.18655819 Mus musculus 10090 Chordata Chordata 187 3.76e-43   NTclustered gi|2717333558|gb|OP562100.1| 10090 g73541 i0 100 48.9590643274854 101 0 59 0 1 101 387 487 Mus musculus strain C57BL/6J T-cell receptor alpha chain mRNA, complete cds blastn 8372 187 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
21633468 21633468 PRJNA846486_P_NODE_5317_length_522_cov_2.638478_g5228_i0 PRJNA846486 5317 522 2.638478 13.77285516 Lampetra 13103 Chordata Chordata 76.8 3.04e-9   NTclustered gi|2805716224|emb|OZ078420.1| 7748 g5228 i0 92.593 40.2394636015326 54 3 10 1 197 250 1754858 1754806 Lampetra fluviatilis genome assembly, chromosome: 17 blastn 21005 76.8 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
23785553 23785553 PRJNA846486_P_NODE_4659_length_551_cov_7.290837_g4571_i0 PRJNA846486 4659 551 7.290837 40.17251187 Mus musculus 10090 Chordata Chordata 1018 0   NTclustered gi|12846872|dbj|AK011025.1| 10090 g4571 i0 100 98.7023593466425 551 0 100 0 1 551 551 1 Mus musculus 13 days embryo liver cDNA, RIKEN full-length enriched library, clone:2510029K11 product:hemoglobin, beta adult major chain, full insert sequence blastn 54385 1018 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
24183036 24183036 PRJNA846486_P_NODE_91719_length_163_cov_0.912281_g91623_i0 PRJNA846486 91719 163 0.912281 1.48701803 root 1 Root_unresolved Root_unresolved 302 1.22e-77   NTclustered gi|31565623|gb|BC053714.1| 10090 g91623 i0 100 4 163 0 100 0 1 163 315 153 Mus musculus cDNA clone IMAGE:30032035, partial cds blastn 652 302 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
25059530 25059530 PRJNA846486_P_NODE_84140_length_166_cov_0.888889_g84044_i0 PRJNA846486 84140 166 0.888889 1.47555574 Apteryx mantelli 2696672 Chordata Chordata 54.7 0.004   NTclustered gi|840015628|emb|LK065178.1| 202946 g84044 i0 96.875 0.542168674698795 32 1 19 0 98 129 133518 133549 Apteryx australis mantelli genome assembly AptMant0, scaffold scaffold609 blastn 90 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Apterygiformes Apterygidae Apteryx Apteryx mantelli

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;