RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA846486" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA846486 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
833389 833389 PRJNA846486_P_NODE_93261_length_162_cov_0.920354_g93165_i0 PRJNA846486 93261 162 0.920354 1.49097348 Campylobacter concisus 199 Bacteria Bacteria 99 1.71e-16   NTclustered gi|930358546|gb|CP012541.1| 199 g93165 i0 88.75 1.48148148148148 80 9 49 0 59 138 498074 498153 Campylobacter concisus strain ATCC 33237 chromosome, complete genome blastn 240 99 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus
4661778 4661778 PRJNA846486_P_NODE_81924_length_167_cov_0.881356_g81828_i0 PRJNA846486 81924 167 0.881356 1.47186452 Sulfurospirillum sp. UCH001 1581011 Bacteria Bacteria 281 1.64e-71   NTclustered gi|757804895|dbj|AP014723.1| 1581011 g81828 i0 97.006 5.95209580838323 167 5 100 0 1 167 101757 101923 Sulfurospirillum sp. UCH001 DNA, complete genome blastn 994 281 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurospirillaceae Sulfurospirillum Sulfurospirillum sp. UCH001
9761392 9761392 PRJNA846486_P_NODE_81988_length_167_cov_0.881356_g81892_i0 PRJNA846486 81988 167 0.881356 1.47186452 Sulfurospirillum sp. UCH001 1581011 Bacteria Bacteria 202 1.3099999999999998e-47   NTclustered gi|757804895|dbj|AP014723.1| 1581011 g81892 i0 88.554 1.98802395209581 166 19 99 0 1 166 1897369 1897534 Sulfurospirillum sp. UCH001 DNA, complete genome blastn 332 202 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurospirillaceae Sulfurospirillum Sulfurospirillum sp. UCH001

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;