RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA846486" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 2 ✖

bioproject 1

  • PRJNA846486 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4661688 4661688 PRJNA846486_P_NODE_44384_length_207_cov_1.316456_g44288_i0 PRJNA846486 44384 207 1.316456 2.72506392 Deinococcus metallilatus 1211322 Bacteria Bacteria 152 1.7399999999999998e-32   NTclustered gi|1609451317|gb|CP038512.1| 1211322 g44288 i0 80.288 1.0048309178744 208 35 99 5 1 205 1304917 1305121 Deinococcus metallilatus strain MA1002 chromosome blastn 208 152 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus metallilatus
5936512 5936512 PRJNA846486_P_NODE_77345_length_169_cov_0.866667_g77249_i0 PRJNA846486 77345 169 0.866667 1.46466723 Deinococcus aetherius 200252 Bacteria Bacteria 233 4.7e-57   NTclustered gi|2281894955|dbj|AP026560.1| 200252 g77249 i0 92.121 9.7396449704142 165 13 98 0 1 165 2448467 2448631 Deinococcus aetherius ST0316 DNA, complete genome blastn 1646 233 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus aetherius

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;